View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_high_7 (Length: 602)

Name: NF18336_high_7
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_high_7
NF18336_high_7
[»] chr1 (4 HSPs)
chr1 (9-588)||(11019805-11020384)
chr1 (83-304)||(31360754-31360974)
chr1 (303-344)||(48582265-48582306)
chr1 (438-482)||(36651148-36651191)
[»] chr8 (3 HSPs)
chr8 (116-337)||(5061238-5061455)
chr8 (138-225)||(44080324-44080412)
chr8 (363-400)||(39898960-39898997)
[»] chr4 (3 HSPs)
chr4 (197-347)||(24684503-24684652)
chr4 (29-290)||(9357613-9357874)
chr4 (142-246)||(18991107-18991211)
[»] chr2 (2 HSPs)
chr2 (223-395)||(20025089-20025261)
chr2 (165-286)||(19996548-19996668)
[»] chr3 (4 HSPs)
chr3 (239-351)||(26506370-26506481)
chr3 (200-348)||(36073429-36073575)
chr3 (159-466)||(7960860-7961159)
chr3 (426-485)||(36145185-36145245)
[»] chr5 (4 HSPs)
chr5 (196-351)||(8132922-8133076)
chr5 (237-351)||(33247812-33247928)
chr5 (249-351)||(41111198-41111300)
chr5 (426-475)||(33248001-33248050)


Alignment Details
Target: chr1 (Bit Score: 539; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 9 - 588
Target Start/End: Complemental strand, 11020384 - 11019805
Alignment:
Q  9 agcaaaggtaggaaatccgaaacttaattaaaaatctttaaaggaacaagccgactaagatcatatttggcaaagccagccatttgattaaatcaatgaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11020384 agcaaaggtaggaaatccgaaacttaattaaaaatctttaaaggaacaagccgactaagatcatatttggcaaagccagccatttgattaaatcaatgag 11020285  T
Q  109 aaacatattgacagcgaaaatcagataacatatgacataacaccttaacctgagataacaaatgatgaaaaataagtaaaacactctcaccatcttcaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11020284 aaacatattgacagcgaaaatcagataacatatgacataacaccttaacctgagataacaaatgatgaaaaataagtaaaacactctcaccatcttcaat 11020185  T
Q  209 gattttaatggcaaagagataatccatctgtacaatgactttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatgtctaacaaaagtct 308  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11020184 gattttaatggcaaagagataatccatttgtacaatgactttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatgtctaacaaaagtct 11020085  T
Q  309 ttcaactaagcaaaatataaaacaaacatgaagattaatttataagnnnnnnntgttagttctttttatatttatttgataatattagcttcgaatatat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||    
T  11020084 ttcaactaagcaaaatataaaacaaacatgaagattaatttataagaaaaaaatgttagttctttttatatttatttgataataatagcttcgaatatat 11019985  T
Q  409 cacatatagtttactagttttttatataagttatgcatttgaaaattaatttattctttactaaattacacttttaatgccggtccctctataagttcaa 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11019984 cacatatagtttactagttttttatataagttatgcatttgaaaattaatttattttttactaaattacacttttaatgccggtccctctataagttcaa 11019885  T
Q  509 ttcctgacaccgtccctatatgaatggatacttgttattatatcggaaaacaaaagatgcaatccttaacctttgttgtg 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11019884 ttcctgacaccgtccctatatgaatggatacttgttattatatcggaaaacaaaaaatgcaatccttaacctttgttgtg 11019805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 83 - 304
Target Start/End: Complemental strand, 31360974 - 31360754
Alignment:
Q  83 gccagccatttgattaaatcaatgaaaaacatattgacagcgaaaatcagataacatatgacataacaccttaacctgagataacaaatgatgaaaaata 182  Q
    |||| ||| |||||||||| || || |||||| |||||| |||||| |||   |||||  ||||||||||||||  ||| | ||||||| ||| |||| |    
T  31360974 gccaaccacttgattaaattaacgagaaacatgttgacaacgaaaaccaggcgacatagaacataacaccttaatatgaaacaacaaattatgtaaaaca 31360875  T
Q  183 agtaaaacactctcaccatcttcaat-gattttaatggcaaagagataatccatctgtacaatgactttaataaaattcatgttgtttgcctatcaaaag 281  Q
     ||||| ||| | ||||||||||||| ||||||||||||||| ||||||||| | | |||||||||  |||| ||||  |||||||||||||||   |||    
T  31360874 cgtaaaccacccgcaccatcttcaatcgattttaatggcaaatagataatccctttatacaatgac-ctaatgaaatctatgttgtttgcctat-tgaag 31360777  T
Q  282 accttggtaaatgtctaacaaaa 304  Q
    ||| ||||||||| || ||||||    
T  31360776 accatggtaaatgccttacaaaa 31360754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 48582265 - 48582306
Alignment:
Q  303 aagtctttcaactaagcaaaatataaaacaaacatgaagatt 344  Q
    ||||||||||||||| ||  ||||||||||||||||||||||    
T  48582265 aagtctttcaactaatcaggatataaaacaaacatgaagatt 48582306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 482
Target Start/End: Complemental strand, 36651191 - 36651148
Alignment:
Q  438 gttatgcatttgaaaattaatttattctttactaaattacacttt 482  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||    
T  36651191 gttatgcatttgaaaatttattt-ttctttactaaattatacttt 36651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 116 - 337
Target Start/End: Original strand, 5061238 - 5061455
Alignment:
Q  116 ttgacagcgaaaatcagataacatatgacataacaccttaacctgagataacaaatgatgaaaaataagtaaaacactctcaccatcttcaatgatttta 215  Q
    ||||||||||||| || |   ||||||||||| ||| ||||||||||||||||||||| |||||   |   |||||||| || |||||||||| ||| ||    
T  5061238 ttgacagcgaaaaccaaacgtcatatgacatatcactttaacctgagataacaaatgaagaaaacacat--aaacactcgcatcatcttcaataattcta 5061335  T
Q  216 atggcaaagagataatccatctgtacaatgactttaataaaattcatgtt--gtttgcctatcaaaagaccttggtaaatgtctaacaaaagtctttcaa 313  Q
    ||||||||||||  |||| | ||||||||||||| ||| |||||||||||  |||||| |||||||||||| ||||||||  ||| |||||| |||| ||    
T  5061336 atggcaaagaga--atccttttgtacaatgactt-aatgaaattcatgttttgtttgcatatcaaaagaccatggtaaataccta-caaaagccttttaa 5061431  T
Q  314 ctaagcaaaatataaaacaaacat 337  Q
    ||||||||||||||||||| ||||    
T  5061432 ctaagcaaaatataaaacagacat 5061455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 44080324 - 44080412
Alignment:
Q  138 atatgacataacaccttaacctgaga-taacaaatgatgaaaaataagtaaaacactctcaccatcttcaatgattttaatggcaaaga 225  Q
    |||||||||||||||||||| |||||  || ||| ||||||||  | ||||||||||  |||||| |||||| ||||||||||| ||||    
T  44080324 atatgacataacaccttaacttgagacaaaaaaaggatgaaaaccatgtaaaacactagcaccattttcaatcattttaatggcgaaga 44080412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 39898960 - 39898997
Alignment:
Q  363 gttagttctttttatatttatttgataatattagcttc 400  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  39898960 gttagttctttttatatttatttgacaatattaacttc 39898997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 197 - 347
Target Start/End: Original strand, 24684503 - 24684652
Alignment:
Q  197 accatcttcaatgattttaatggcaaagagataatccatctgtacaatgactttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatgtc 296  Q
    |||||||||||| |||||||||| | ||||| ||||| ||| ||| | ||| | ||| ||||||||||||||||||| |||||||| | ||||||||       
T  24684503 accatcttcaatcattttaatggtagagagagaatccctctatacgacgacat-aatgaaattcatgttgtttgcctttcaaaagatcatggtaaatact 24684601  T
Q  297 taacaaaagtctttcaactaagcaaaatataaaacaaacatgaagattaat 347  Q
    | ||||||||||||  ||||| ||||||||||||||| |||||||||||||    
T  24684602 tcacaaaagtctttttactaaacaaaatataaaacaagcatgaagattaat 24684652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 9357613 - 9357874
Alignment:
Q  29 aacttaattaaaaatctttaaaggaacaagccgactaagatcatat--ttggcaaagccagccatttgattaaatcaatgaaaaacatattgacagcgaa 126  Q
    |||| ||||||| |||||||||||||||    |||||||| |||||  ||||||  | ||  || |||||||||| || ||  |||||  |||||  |||    
T  9357613 aactaaattaaacatctttaaaggaacataatgactaagaccatatacttggcagggtcaaacacttgattaaattaacgagtaacatgctgacaatgaa 9357712  T
Q  127 aatcagataacatatgacataacaccttaacctgagataacaaatgatgaaaaataagtaaa-acactctcaccatcttcaatgattttaatggcaaaga 225  Q
    || || |||||| | || |||||||||||| || |||||| |||||| ||||||   ||||  ||||||  | |||||||||||| ||||||| || |||    
T  9357713 aaccatataacagaggagataacaccttaagctaagataaaaaatgacgaaaaacttgtaagtacactcgtaacatcttcaatgagtttaatgacataga 9357812  T
Q  226 gataatccatctgtacaatgactttaataaaattcatgttgtttgcctatcaaaagaccttggta 290  Q
    ||  || | | ||||||||||||| ||| |||| ||||||||||| ||||||| ||||| |||||    
T  9357813 ga--attcctttgtacaatgactt-aatgaaatgcatgttgtttgtctatcaatagaccatggta 9357874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 18991107 - 18991211
Alignment:
Q  142 gacataacaccttaacctgagataacaaatgatgaaaaataagtaaaacactctcaccatcttcaatgattttaatggcaaagagataatccatctgtac 241  Q
    |||||||||| | ||  |||||||| ||||||| ||||| |  ||||||||    |||||||||||| |||||||||||| ||||| |||  || |||||    
T  18991107 gacataacacgtaaatatgagataaaaaatgataaaaaacacataaaacacctgtaccatcttcaatcattttaatggcagagagagaatttatttgtac 18991206  T
Q  242 aatga 246  Q
    |||||    
T  18991207 aatga 18991211  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 223 - 395
Target Start/End: Original strand, 20025089 - 20025261
Alignment:
Q  223 agagataatccatctgtacaatgactttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatgtcta-acaaaagtctttcaactaagcaa 321  Q
    ||||| |||| || |||||||| |||| |||||||| ||||||||||| ||||||| ||||  | ||||||  |   |||||||||||| || |||||||    
T  20025089 agagaaaatctatttgtacaataactt-aataaaatccatgttgtttgtctatcaagagacaattgtaaatacccccacaaaagtcttttaattaagcaa 20025187  T
Q  322 aatataaaacaaacatgaagattaatttataagnnnnnnntgttagttctttttatatttatttgataatatta 395  Q
    |||||||||||||||||||||||||||||| ||       |||||||| | ||||||||| ||||| |||||||    
T  20025188 aatataaaacaaacatgaagattaatttatcagaagaaaatgttagttgtatttatatttgtttgacaatatta 20025261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 19996548 - 19996668
Alignment:
Q  165 aacaaatgatgaaaaataagtaaaacactctcaccatcttcaatgattttaatggcaaagagataatccatctgtacaatgactttaataaaattcatgt 264  Q
    ||||||||| |||||| | ||||||||||| ||||||||||||| |||||| ||    ||||||||||  | |||||| | || ||||| |||| |||||    
T  19996548 aacaaatgacgaaaaacatgtaaaacactcacaccatcttcaatcattttattgattgagagataatctctttgtacagtaac-ttaatgaaatccatgt 19996646  T
Q  265 tgtttgcctatcaaaagacctt 286  Q
    ||||||| ||||||||||||||    
T  19996647 tgtttgcatatcaaaagacctt 19996668  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 26506370 - 26506481
Alignment:
Q  239 tacaatgactttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatgtctaacaaaagtctttcaactaagcaaaatataaaacaaacatg 338  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||| | ||||||   |||| ||| ||| |||||||||||||   |||    
T  26506370 tacaatgactt-aatgaaattcatgttgtttgcctatcaaaagactatggtaaatgcccaacaaatcccttttaacaaagaaaaatataaaacaggtatg 26506468  T
Q  339 aagattaatttat 351  Q
    | |||||||||||    
T  26506469 aggattaatttat 26506481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 348
Target Start/End: Original strand, 36073429 - 36073575
Alignment:
Q  200 atcttcaatgattttaatggcaaagagataatccatctgtacaatgactttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatgtctaa 299  Q
    ||||||||| |||||||||||| |||  |||||| | ||||||||||||| | ||||||  ||| | ||||||||| |||||||| | ||||||| || |    
T  36073429 atcttcaatcattttaatggcatagatgtaatcctt-tgtacaatgacttga-taaaatctatggtttttgcctataaaaagaccatagtaaatgcctca 36073526  T
Q  300 caaaagtctttcaactaagcaaaatataaaacaaacatgaagattaatt 348  Q
    |||||| |||| |||||||||| | | ||||||| | ||||||||||||    
T  36073527 caaaaggcttttaactaagcaacacaaaaaacaatcttgaagattaatt 36073575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 466
Target Start/End: Complemental strand, 7961159 - 7960860
Alignment:
Q  159 tgagataacaaatgatgaaaaataagtaaaacactctcaccatcttcaatgattttaatggcaaagagataatccatctgtacaatgactttaataaaat 258  Q
    |||||||||||||||| ||||| |  ||||||| |  ||||||||||||| |||| |  ||    |||| ||||| | ||||||||||| | | |||| |    
T  7961159 tgagataacaaatgataaaaaacacataaaacatttgcaccatcttcaatcatttaacggg----gagagaatccctttgtacaatgacctaactaaa-t 7961065  T
Q  259 tcatgttgtttgcctatcaaaagaccttggtaaatgtctaacaaaagtctttcaactaagcaaaatataaaacaaacatgaagattaatttataagnnnn 358  Q
     ||| || |||| ||||||||||| | |||||||||||  ||||||| |||| || |||||||| ||||||| ||  |||| ||||||||||| ||        
T  7961064 ccatattatttgtctatcaaaagatcatggtaaatgtcccacaaaagccttttaattaagcaaa-tataaaataagtatgacgattaatttattagaaga 7960966  T
Q  359 nnntgttagttctttttatatttatttgataatattagcttcgaatatatcacatatagtttactagttttttatataagttatgcatttgaaaattaat 458  Q
       |||||||| ||||||||||| ||||| ||||||| ||| | ||||||  |||||| |||  || ||| || ||| | ||||||||||||||| | ||    
T  7960965 aaatgttagttatttttatatttgtttgacaatattaactttggatatat--catataattttttaatttattctattaattatgcatttgaaaaattat 7960868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 485
Target Start/End: Original strand, 36145185 - 36145245
Alignment:
Q  426 ttttttatataagttatgcatttgaaaattaat-ttattctttactaaattacacttttaa 485  Q
    |||||| |||||||| ||||||| ||| || || || ||||||||||||||||||||||||    
T  36145185 ttttttttataagttctgcatttaaaagtttatatttttctttactaaattacacttttaa 36145245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 8132922 - 8133076
Alignment:
Q  196 caccatcttcaatgattttaatggcaaagagataatccatctgtacaatgactttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatgt 295  Q
    |||||||||| || |||||||||  | |||||||||| || ||| |||| |||| |||  ||| |||  ||||||||| |||||||| | ||||||||      
T  8132922 caccatcttctatcattttaatgaaagagagataatctatttgttcaataactt-aatggaatccatagtgtttgcctctcaaaagatcatggtaaatac 8133020  T
Q  296 ctaacaaaagtctttcaactaagcaaaatataaaacaaacatgaagattaatttat 351  Q
       |||||||||||| |||||| ||||||||||||||| |||||||||||| ||||    
T  8133021 tccacaaaagtcttttaactaaccaaaatataaaacaagcatgaagattaagttat 8133076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 237 - 351
Target Start/End: Original strand, 33247812 - 33247928
Alignment:
Q  237 tgtacaatgactttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatg-tctaacaaaagtctttcaactaag--caaaatataaaacaa 333  Q
    ||||||||||||| ||||||||  |||||||||| ||||||||||||| | | |||||  || ||||||| |||| |||||||   ||||||||||||||    
T  33247812 tgtacaatgactt-aataaaatctatgttgtttgtctatcaaaagaccataggaaatgccctcacaaaagccttttaactaagtaaaaaatataaaacaa 33247910  T
Q  334 acatgaagattaatttat 351  Q
     || ||||||||||||||    
T  33247911 gcacgaagattaatttat 33247928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 41111300 - 41111198
Alignment:
Q  249 ttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatgtctaacaaaagtctttcaactaagcaaaatataaa-acaaacatgaagattaat 347  Q
    ||||| ||||||||||||||| |||||||||||||| ||  ||||| |  | ||||  |||| |||||||||||||||||| |||| |||||| ||||||    
T  41111300 ttaatgaaattcatgttgtttacctatcaaaagaccatgacaaatgccccataaaaacctttaaactaagcaaaatataaacacaagcatgaa-attaat 41111202  T
Q  348 ttat 351  Q
    ||||    
T  41111201 ttat 41111198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 475
Target Start/End: Original strand, 33248001 - 33248050
Alignment:
Q  426 ttttttatataagttatgcatttgaaaattaatttattctttactaaatt 475  Q
    |||||||||||||||| ||||||||||||| |||| ||||| ||||||||    
T  33248001 ttttttatataagttaagcatttgaaaatttattttttcttcactaaatt 33248050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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