View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_low_20 (Length: 352)
Name: NF18336_low_20
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 27448833 - 27448497
Alignment:
| Q |
4 |
atattttcagcaaggcgttcaactctcacgagtctagcaacctgaggagtaaaactcctgtgccattcagtatcaagtattttgtccaaatgtatcccat |
103 |
Q |
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| T |
27448833 |
atattttcagcaaggcgttcaactctcacgagtctagcgacatgaggagtaaaactcctgtgccattcagtatcaagtattttgtccaaatgtatcccat |
27448734 |
T |
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| Q |
104 |
catcgaagattactgtagagattcttgcagctttgaagcatgttgaactaatagattctaatcctgagattcttctgtattcttcaacagcttccaaagt |
203 |
Q |
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| T |
27448733 |
catcgaagatcactgtagagattcttgcagctttgaagcatgttgaactaacagattctaatcctgaaattcttctgtattcttcaacagcttccaaagt |
27448634 |
T |
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| Q |
204 |
tggctcgcatccatacaacgcagcaacatctcttagatttctctgccatcacaaaaataaccaatcgattatttttagatatttccttagaagtaaacaa |
303 |
Q |
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| T |
27448633 |
tggctcgcatccatacaactcagcaacatctcttagatttctctgccatcacaaaaataaccaatcaatt-tttttagatatttccttagaagtaaacaa |
27448535 |
T |
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| Q |
304 |
agcatagaatgttttttaccttgaaggatagagagtat |
341 |
Q |
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| T |
27448534 |
agcatagaatgttttttaccttgaaggatagagagtat |
27448497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 248
Target Start/End: Complemental strand, 27403087 - 27402893
Alignment:
| Q |
54 |
aaaactcctgtgccattcagtatcaagtattttgtccaaatgtatcccatcatcgaagattactgtagagattcttgcagctttgaagcatgttgaac-t |
152 |
Q |
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| T |
27403087 |
aaaactcttatgccattctatatcatgcattttgtccaattcaaacccatcatccatgagtatagcagagattcttgcagctttgaaacatgttgaacat |
27402988 |
T |
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| Q |
153 |
aatagattctaatcctgagattcttctgtattcttcaacagcttccaaagttggctcgcatccatacaacgcagcaacatctcttagatttctctg |
248 |
Q |
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| T |
27402987 |
gaca-attccaatccagagacttttcggtgttcttcaacaccttgcaaagataactcacatccatatagctcagctaaatcccttagatttctctg |
27402893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 27424105 - 27424007
Alignment:
| Q |
53 |
taaaactcctgtgccattcagtatcaagtattttgtccaaatgtatcccatcatcgaagattactgtagagattcttgcagctttgaagcatgttgaac |
151 |
Q |
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| T |
27424105 |
taaaactcttatgccattctatatcatacattttgtccaattctaacccatcatccatgagtatagcagagattcttgcagctttgaaacatgttgaac |
27424007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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