View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_low_21 (Length: 347)

Name: NF18336_low_21
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_low_21
NF18336_low_21
[»] chr6 (4 HSPs)
chr6 (235-322)||(8739827-8739913)
chr6 (87-158)||(19548713-19548784)
chr6 (89-145)||(8739693-8739748)
chr6 (87-135)||(9968615-9968663)
[»] chr5 (2 HSPs)
chr5 (235-322)||(10480932-10481018)
chr5 (89-145)||(10481097-10481152)
[»] chr3 (4 HSPs)
chr3 (90-163)||(30032887-30032960)
chr3 (87-159)||(27755941-27756013)
chr3 (95-163)||(39036957-39037026)
chr3 (87-163)||(32284898-32284974)
[»] scaffold1938 (1 HSPs)
scaffold1938 (87-163)||(1043-1119)
[»] scaffold0040 (1 HSPs)
scaffold0040 (87-163)||(61989-62065)
[»] chr8 (4 HSPs)
chr8 (87-159)||(38983828-38983900)
chr8 (87-159)||(39014925-39014997)
chr8 (96-163)||(38145630-38145697)
chr8 (95-155)||(10818229-10818289)
[»] chr2 (4 HSPs)
chr2 (87-163)||(18340884-18340960)
chr2 (87-163)||(23890950-23891026)
chr2 (90-163)||(664104-664177)
chr2 (89-160)||(25469733-25469804)
[»] chr7 (2 HSPs)
chr7 (87-163)||(649308-649385)
chr7 (87-163)||(272000-272076)
[»] scaffold1954 (1 HSPs)
scaffold1954 (91-163)||(1043-1115)
[»] chr4 (2 HSPs)
chr4 (89-137)||(13399873-13399921)
chr4 (87-163)||(18889088-18889164)
[»] chr1 (2 HSPs)
chr1 (87-159)||(39576268-39576341)
chr1 (87-163)||(9762507-9762583)
[»] scaffold1074 (1 HSPs)
scaffold1074 (112-161)||(1713-1762)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 8739827 - 8739913
Alignment:
Q  235 agctctccactagtgatgtagcgaattaggagtcccccgccaatcatgtatttcagaaatttcgttgattttaagcaagcgagctttg 322  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8739827 agctctccactagtgatgtagcgaattaggagtcccc-gtcaatcatgtatttcataaatttcgttgattttaagcaagcgagctttg 8739913  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 19548784 - 19548713
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagttta 158  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  19548784 cacaatagtaacattttaatttattagatagttagtgttactaatagaagagagaattttcaaaatagttta 19548713  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 8739693 - 8739748
Alignment:
Q  89 caatagtaacattttaattgattagatagttagtgttactaatataagagtgaattt 145  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  8739693 caatagtaacattttaattgattagatagttagt-ctactaatataagagtgaattt 8739748  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 9968663 - 9968615
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataa 135  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  9968663 cacaatagtaatattttaatttattagatagttagtgttactaatataa 9968615  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 10481018 - 10480932
Alignment:
Q  235 agctctccactagtgatgtagcgaattaggagtcccccgccaatcatgtatttcagaaatttcgttgattttaagcaagcgagctttg 322  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10481018 agctctccactagtgatgtagcgaattaggagtcccc-gtcaatcatgtatttcataaatttcgttgattttaagcaagcgagctttg 10480932  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 10481152 - 10481097
Alignment:
Q  89 caatagtaacattttaattgattagatagttagtgttactaatataagagtgaattt 145  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  10481152 caatagtaacattttaattgattagatagttagt-ctactaatataagagtgaattt 10481097  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 30032887 - 30032960
Alignment:
Q  90 aatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30032887 aatagtaacattttaattgatcagatagttagtgttactaatataagattgaattttcaaaatagtttaggctc 30032960  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 27755941 - 27756013
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttag 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||    
T  27755941 cacaatagtaacattttaattgattagatagttagtgttactaatataagagaggattttcaaaacagtttag 27756013  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 39036957 - 39037026
Alignment:
Q  95 taacattttaattgattagatagttagtgttactaatataagag-tgaattttcaaaatagtttaggctc 163  Q
    |||||||||||||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  39036957 taacattttaattgattaaatagttagagttactaatataagagaggaattttcaaaatagtttaggctc 39037026  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 32284898 - 32284974
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    ||||||||||| ||||||||| |||| ||  ||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  32284898 cacaatagtaatattttaatttattatatgattagtgtcactaatataagagagaatttttaaaatagtttaggctc 32284974  T

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Target: scaffold1938 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1938
Description:

Target: scaffold1938; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 1119 - 1043
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  1119 cacaatagtaacattttaattgattagatagttagtgttactaatataagagaggattttcaaaacagtttaggctc 1043  T

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Target: scaffold0040 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 62065 - 61989
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |||||||||||    
T  62065 cacaatagtaacattttaattgattagatagttagcgttactaatataagagaggattttcaaaacagtttaggctc 61989  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 38983828 - 38983900
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttag 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||    
T  38983828 cacaatagtaacattttaattgattagatagttagtgttactaatataagagaggattttcaaaacagtttag 38983900  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 39014925 - 39014997
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttag 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||    
T  39014925 cacaatagtaacattttaattgattagatagttagtgttactaatataagagaggattttcaaaacagtttag 39014997  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 38145697 - 38145630
Alignment:
Q  96 aacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  38145697 aacattttaattgattagatagttagtgttactaatataagagaggattttcaaaacagtttaggctc 38145630  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 10818229 - 10818289
Alignment:
Q  95 taacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagt 155  Q
    ||||| |||||||||| | ||| ||||||||||||||||||||| | ||||||||||||||    
T  10818229 taacaatttaattgatcaaataattagtgttactaatataagagagtattttcaaaatagt 10818289  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 18340884 - 18340960
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||    
T  18340884 cacaatagtaacattttaattgattaggtagatggtgttactaatataagagtgaattttcaaaataatttaggctc 18340960  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 23890950 - 23891026
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  23890950 cacaatagtaacattttaattgattaaatacttagtgttactaatataagagagaatttttaaaatagtttaagctc 23891026  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 664177 - 664104
Alignment:
Q  90 aatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||||| ||| |||||||    
T  664177 aatagtaacattttaattgattagatagttagtgttactgatataagagatgattttcaaaacagtataggctc 664104  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 25469733 - 25469804
Alignment:
Q  89 caatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttagg 160  Q
    ||||||||||||  |||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||    
T  25469733 caatagtaacatagtaattgattagatagtcaatgttactaatataagagagaattttcagaatagtttagg 25469804  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 649308 - 649385
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtg-aattttcaaaatagtttaggctc 163  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||    
T  649308 cacaatagtaacattttaattgattaaatagttagagttactaatataagagagaaattttcaaaatagtttaggctc 649385  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 272000 - 272076
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||||||| | |||||||||  |||||||||||    
T  272000 cacaatagtaacattttaattgatcagatagttactgttaataatataagagaggattttcaaagcagtttaggctc 272076  T

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Target: scaffold1954 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold1954
Description:

Target: scaffold1954; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 1115 - 1043
Alignment:
Q  91 atagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||    
T  1115 atagtaacattttaattgattagataattagtgttactaatataagagaggattttcaaaacagtttaggctc 1043  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 13399873 - 13399921
Alignment:
Q  89 caatagtaacattttaattgattagatagttagtgttactaatataaga 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13399873 caatagtaacattttaattgattagatagttagtgttactaatataaga 13399921  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 18889088 - 18889164
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    |||||||||||||||||||||||||||||||||||  |||| ||| |||||| | |||||||||| |||||||||||    
T  18889088 cacaatagtaacattttaattgattagatagttagcattacaaatttaagagaggattttcaaaacagtttaggctc 18889164  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 39576341 - 39576268
Alignment:
Q  87 cacaatagtaacattttaattgattagatagtt-agtgttactaatataagagtgaattttcaaaatagtttag 159  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||| |  |||||||||||| |||||||    
T  39576341 cacaatagtaacattttaattgatcagatagttaagtgttactaatataaaaaagaattttcaaaacagtttag 39576268  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 9762507 - 9762583
Alignment:
Q  87 cacaatagtaacattttaattgattagatagttagtgttactaatataagagtgaattttcaaaatagtttaggctc 163  Q
    |||||||||||||||||||||||| ||||||||||  | |||| ||||||||   |||||||||| |||||||||||    
T  9762507 cacaatagtaacattttaattgatcagatagttagcatcactattataagagatgattttcaaaacagtttaggctc 9762583  T

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Target: scaffold1074 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1074
Description:

Target: scaffold1074; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 1762 - 1713
Alignment:
Q  112 agatagttagtgttactaatataagagtgaattttcaaaatagtttaggc 161  Q
    |||||||||||||||||||| |||||| ||| ||| |||||||| |||||    
T  1762 agatagttagtgttactaatgtaagagagaaattttaaaatagtgtaggc 1713  T

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