View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_low_23 (Length: 322)
Name: NF18336_low_23
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 19172351 - 19172666
Alignment:
| Q |
1 |
cgtcaagaaaagaacgagcaagattggtgaagatgaaaggatggaggtcagagatccaaagaagaggcttttctaaggagttatgccagtcttggttgag |
100 |
Q |
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| T |
19172351 |
cgtcaagaaaagaacgagcaagattggtgaagatgaaaggatggaggtcagagatccaaagaagaggcttttctaaggagttatgccagtcttggttgag |
19172450 |
T |
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| Q |
101 |
gatttgagaagggtctgtggttgcagctgcgtcgagggtgtggtagtaagattggaagtgttggtggatgagctcaacgtgagttgagaggagggttaag |
200 |
Q |
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| T |
19172451 |
gatttgagaagggtctgtgattgcagctgcgtcgagggtgtggtagtaagattggaagtgttggtggatgagctcaacgtgagttgagaggagggttaag |
19172550 |
T |
|
| Q |
201 |
gaggcgccggagatagaacgacggagtaatgggaggtgattgttcttgagtgtgttgaaccattctgtgtagtattctttgaatggacgcgacgtcgatg |
300 |
Q |
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| T |
19172551 |
gagtcgccggagatagaacgacggagtaatgggaggtgattgttcttgagtgtgttgaaccattctgtgtagtattctttgaatggacgcgacgtcgatg |
19172650 |
T |
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| Q |
301 |
atgaagatgatgatgt |
316 |
Q |
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|||||||||||||||| |
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| T |
19172651 |
atgaagatgatgatgt |
19172666 |
T |
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