View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18336_low_24 (Length: 318)
Name: NF18336_low_24
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_low_24 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0491 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 1139 - 1440
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1139 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1238 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1239 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
1338 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1339 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
1438 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
1439 |
tc |
1440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 6026 - 6327
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
6026 |
acatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaaaccataaagcttcacga |
6125 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6126 |
tatgtttgtgctttatttctgttaaaattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
6225 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
6226 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctttgattatg |
6325 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
6326 |
tc |
6327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 18739260 - 18739561
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739260 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
18739359 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739360 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
18739459 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739460 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
18739559 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
18739560 |
tc |
18739561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 18744224 - 18744525
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744224 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
18744323 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744324 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
18744423 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744424 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
18744523 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
18744524 |
tc |
18744525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 18749185 - 18749486
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18749185 |
acatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
18749284 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18749285 |
tatgtttgtgctttatttctgttaaaattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
18749384 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
18749385 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctttgattatg |
18749484 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
18749485 |
tc |
18749486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 18723533 - 18723834
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18723533 |
acatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacta |
18723632 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18723633 |
tatgtttgtgctttatttctgttaaaattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
18723732 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
18723733 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctttgattatg |
18723832 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
18723833 |
tc |
18723834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 18732996 - 18733045
Alignment:
| Q |
119 |
ctttatttctgataatattctcacttcatttctgaaactatcatcaaaag |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
18732996 |
ctttatttctgataatattctcacttcatttctaaaactctaatcaaaag |
18733045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 1106140 - 1105839
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1106140 |
acatcatcatacaagatagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1106041 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
1106040 |
tatgtcggtgctttatttctgataatattctcacttcatttttgaaactctcatcaaaagatggaacctcgacttcatagccgtgaagtttctttaaggc |
1105941 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
1105940 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctccagttccaatgcaatatctcatgtcaaagtcttccgttgctttgattatg |
1105841 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
1105840 |
tc |
1105839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 1604527 - 1604237
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604527 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1604428 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
1604427 |
tatgtcggtgctttatttctgataatattttcacttcatttttgaaactctcatcaaaagatggaacctcttcttcatagccgtgaagtttctttaaggc |
1604328 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
1604327 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcgaagtcttccgttgct |
1604237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 1088791 - 1088490
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088791 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1088692 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
1088691 |
tatgtttgtgctttatttctgataatattctcacttcatttttgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
1088592 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |
|
|
| T |
1088591 |
aacaaccttgccacttggtaattgtgccttgtaaacacttctatatgctcctgttccaatgcaatatctcatgtcaaagtcctctgttgctttaataatg |
1088492 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
1088491 |
tc |
1088490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 1541489 - 1541790
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1541489 |
acatcatcatacaagacagagaataagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaa |
1541588 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
1541589 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
1541688 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1541689 |
aacaacctttccacatggtaattgtgccttgtaaacacttccatatgctccggttccaatgcaatatctcatgtcgaagtcttctgttgctttgatgatg |
1541788 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
1541789 |
tc |
1541790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 1596197 - 1595896
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596197 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1596098 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
1596097 |
tatgtcggtgctttatttctgataatattctcacttcatttttgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
1595998 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1595997 |
aacaacctttccacttggtaattgtgccctgtaaacacttccatatgctcccgttccaatgcaatatctcatgtcaaagtcttctgttgctttgattatg |
1595898 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
1595897 |
tc |
1595896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 1557433 - 1557734
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1557433 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatatatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacga |
1557532 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| || |
|
|
| T |
1557533 |
tatgtttgtgctttatttctgataatattctcacttcatttctgaaactctcatcaaaagatggaacctcagcttcatagccgtgaagtttctttaaagc |
1557632 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1557633 |
aacaacattaccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
1557732 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
1557733 |
tc |
1557734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 1550723 - 1551024
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
||||| |||||||||| || ||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
1550723 |
acatcgtcatacaagacagtgaacaagcttcctctctccatgtactgatagatcaaaaacatgattctcttgtgcaagcagaatccatgaagcttcacaa |
1550822 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
1550823 |
tatgtcggtgctttatttctgtcaatattctcacttcatttctgaaactctcatcaaaagatggaacgtctgcttcatagccatgaagtttctttaaggc |
1550922 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
1550923 |
gacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctccggttccaatgcaatatctcatgtcaaagtcttctgttgctttaataatg |
1551022 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
1551023 |
tc |
1551024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 2329828 - 2329530
Alignment:
| Q |
12 |
tcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatat |
111 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||||||| | ||||||||||||||||||||| |||| | |||||||||||||||||||| |||| |
|
|
| T |
2329828 |
tcatcatacaagacagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatat |
2329729 |
T |
|
| Q |
112 |
gtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaac |
211 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
2329728 |
gccggtgctttatatctgataatattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttattgcaac |
2329629 |
T |
|
| Q |
212 |
aaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtc |
310 |
Q |
| |
|
||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
2329628 |
aacttttccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctaatgtcaaagtcttctgttgctttaatgatgtc |
2329530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 2321332 - 2321032
Alignment:
| Q |
10 |
catcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaat |
109 |
Q |
| |
|
||||||||||||||| |||||||| |||| | |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2321332 |
catcatcatacaagacggagaacaaacttcctctctccatgtaatggtagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaat |
2321233 |
T |
|
| Q |
110 |
atgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggca |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| | |||||||||||||| |||||||||||| |||||| |
|
|
| T |
2321232 |
atttcggtgctttatttctgataatattctcacttcatttctaaaactttcatcaaaagctggcagctctgcttcatagccgtgaagtttcttcaaggca |
2321133 |
T |
|
| Q |
210 |
acaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgt |
309 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | ||||||| |
|
|
| T |
2321132 |
acaacttttccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctaatgtcaaaatcttccgttgctctaatgatgt |
2321033 |
T |
|
| Q |
310 |
c |
310 |
Q |
| |
|
| |
|
|
| T |
2321032 |
c |
2321032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 2337727 - 2337429
Alignment:
| Q |
12 |
tcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatat |
111 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||||||||| | ||||||||||||||||||||| |||| | |||||||||||||||||||| |||| |
|
|
| T |
2337727 |
tcatcatacaagccagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatat |
2337628 |
T |
|
| Q |
112 |
gtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaac |
211 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
2337627 |
gtcggtgctttatatctgataatattttcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttattgcaac |
2337528 |
T |
|
| Q |
212 |
aaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtc |
310 |
Q |
| |
|
||| || |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
2337527 |
aacttttccacatggtaattgtgccttataaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtc |
2337429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 3955480 - 3955782
Alignment:
| Q |
8 |
gacatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcaca |
107 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||| ||||| || ||||||||||||||||| | |||||| ||||| || |||||||||||||||||| |
|
|
| T |
3955480 |
gacatcatcatgcaagacggagaacaagcttcctttttccatatactgatagatcaaaaacataactcttttatgcaaacaaaatccataaagcttcaca |
3955579 |
T |
|
| Q |
108 |
atatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaagg |
207 |
Q |
| |
|
|||| || |||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||| ||||||||||| |||| |||||||| |||| | |
|
|
| T |
3955580 |
atatttctgtgctttatttctgataatattttcacttcatttctaaaactttcatcaagagatggcacctctgcttcgtagctatgaagtttttttagtg |
3955679 |
T |
|
| Q |
208 |
caacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgat |
307 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||| | ||||| |
|
|
| T |
3955680 |
caacaaatttaccacttggtaattgtgccttgtaaacacttccatatgctccttttccaatgcaatatttaatgtcaaagtcttttgttgctctaatgat |
3955779 |
T |
|
| Q |
308 |
gtc |
310 |
Q |
| |
|
||| |
|
|
| T |
3955780 |
gtc |
3955782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 9532075 - 9532375
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||| | |||||||| |||| |||||| | |||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||| |
|
|
| T |
9532075 |
acatcatcatacaaaaacgagaacaaacttcctttctc-acgtattgatagatcaaaaacatgattcttttgtacaatcataatccataaagcttaacaa |
9532173 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||| | ||| ||||||| | ||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
9532174 |
tatttatgtgatttattttttataatattctcgcttcatttttgaaactcgcatcaaaagatggcacctctgcttcatagatgtgaagtttctttaaggc |
9532273 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
||||| ||| ||| ||||||||| | |||||| |||||||||||||||||||| | ||||||||||| |||||||||| || | ||||||| || ||| |
|
|
| T |
9532274 |
gacaactttgtcacatggtaattgagtcttgtatacacttccatatgctcctgtccatatgcaatatctaatgtcaaagtgttgtattgctttaataatg |
9532373 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
9532374 |
tc |
9532375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 30792447 - 30792145
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattctttt-gtgcaagcagaatccataaagcttcaca |
107 |
Q |
| |
|
|||||||||||||| | | ||||| |||||| |||||| | |||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
30792447 |
acatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattctttttgtgcaagcagaatctataaagcttaaca |
30792348 |
T |
|
| Q |
108 |
atatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaagg |
207 |
Q |
| |
|
|||| | ||||||||||| |||||||||||||||||||||| ||||||| | ||||||||| || | || ||||||| ||||||||||| ||||| |
|
|
| T |
30792347 |
atatttatgtgctttatttatgataatattctcacttcatttatgaaacttgtaacaaaagatgacacatttgtttcatagttgtgaagtttctataagg |
30792248 |
T |
|
| Q |
208 |
caacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgat |
307 |
Q |
| |
|
||||||| ||||||| || ||| || | |||||| |||||| ||| | ||| ||| | ||| ||||||| |||||||||| || ||||||||| || || |
|
|
| T |
30792247 |
caacaactttgccacatgataaatgagtcttgtatacactttcatgtcctcatgtctcgatgtaatatctaatgtcaaagtgttatgttgctttaataat |
30792148 |
T |
|
| Q |
308 |
gtc |
310 |
Q |
| |
|
||| |
|
|
| T |
30792147 |
gtc |
30792145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 19250547 - 19250247
Alignment:
| Q |
9 |
acatcatcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
108 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19250547 |
acatcatcatacaaaaccgagaacaagcttcatttttc-atgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttaacaa |
19250449 |
T |
|
| Q |
109 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
208 |
Q |
| |
|
||| | ||| ||||| | ||||||||||||||||||| |||||||||| |||||||||| || || ||| |||||||| ||||| ||||||||| || |
|
|
| T |
19250448 |
tatttatgtgttttatatatgataatattctcacttcaattctgaaactcgcatcaaaagacggcacatctacttcatagttgtgaaatttctttaaagc |
19250349 |
T |
|
| Q |
209 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
308 |
Q |
| |
|
||||| || |||| ||||||| | | |||||| |||||| |||||| |||||| ||||||||||| |||||||||| || ||||||||| || ||| |
|
|
| T |
19250348 |
gacaactttaccacatggtaatcgagtcttgtatacactttcatatgatcctgtcatgatgcaatatctaatgtcaaagtgttgtgttgctttaataatg |
19250249 |
T |
|
| Q |
309 |
tc |
310 |
Q |
| |
|
|| |
|
|
| T |
19250248 |
tc |
19250247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 47 - 288
Target Start/End: Original strand, 41668852 - 41669093
Alignment:
| Q |
47 |
catgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttca |
146 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||| | |||||||||| | |||||||| |||||||| |
|
|
| T |
41668852 |
catgtatcgatagattaaaaacattattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttattttttataatattttcacttca |
41668951 |
T |
|
| Q |
147 |
tttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaaccttgccacttggtaattgtgccttgtaaacac |
246 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||||| ||||||||||||||||| ||| ||||||| || |||||| | |||||| |||| |
|
|
| T |
41668952 |
attctgaaactcacatcaaaagatgacacatctgcttcatagttgtgaagtttctttaaggtggcaaatttgccacatgataattgagtcttgtatacac |
41669051 |
T |
|
| Q |
247 |
ttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
288 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
41669052 |
ttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
41669093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 47 - 288
Target Start/End: Original strand, 42977778 - 42978019
Alignment:
| Q |
47 |
catgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttca |
146 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
42977778 |
catgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
42977877 |
T |
|
| Q |
147 |
tttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaaccttgccacttggtaattgtgccttgtaaacac |
246 |
Q |
| |
|
|||||||| | |||||||||||| || |||||||||||| ||||||||||||||||| ||| ||||||| || |||||| | |||||| |||| |
|
|
| T |
42977878 |
attctgaaattcgcatcaaaagatgacacatctgcttcatagttgtgaagtttctttaaggtggcaaatttgccacatgataattgagtcttgtatacac |
42977977 |
T |
|
| Q |
247 |
ttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
288 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
42977978 |
ttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
42978019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 48712405 - 48712677
Alignment:
| Q |
15 |
tcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtc |
114 |
Q |
| |
|
|||||||| || |||||||| ||| ||| | ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||| | |
|
|
| T |
48712405 |
tcatacaaaatcgagaacaaactttcttttttcatgtattgatagattgaaaatatgattcttttgtgcaagcaaaatccataaagcttaacaatattta |
48712504 |
T |
|
| Q |
115 |
ggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaac |
214 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| |||||||| | |||||||||| | || ||||||| |||| ||||||||||||||||| ||| |
|
|
| T |
48712505 |
tctg-tttatttttgataatattctcacttcaattctgaaaatcgcatcaaaagaagacacatctgcttaatagttgtgaagtttctttaaggtggcaaa |
48712603 |
T |
|
| Q |
215 |
cttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
288 |
Q |
| |
|
||||||| || |||||| | |||||| ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
48712604 |
tttgccacatgataattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
48712677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 47 - 288
Target Start/End: Complemental strand, 54123025 - 54122784
Alignment:
| Q |
47 |
catgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttca |
146 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| | |||| | |||||||||| | ||||||||||||||||| |
|
|
| T |
54123025 |
catgtattgatagattaaaaacatgattcttttgtgcaagcaaaatatataaagcttaaagatatttatctgctttattttttataatattctcacttca |
54122926 |
T |
|
| Q |
147 |
tttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaaccttgccacttggtaattgtgccttgtaaacac |
246 |
Q |
| |
|
|| ||||||| |||||||||||| || |||||||||||| ||||||||||||||||| ||| ||||||| || |||||| | |||||| |||| |
|
|
| T |
54122925 |
attgtgaaactcacatcaaaagatgacacatctgcttcatagttgtgaagtttctttaaggtggcaaatttgccacatgataattgagtcttgtatacac |
54122826 |
T |
|
| Q |
247 |
ttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
288 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
54122825 |
ttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
54122784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 116 - 312
Target Start/End: Complemental strand, 16880331 - 16880134
Alignment:
| Q |
116 |
gtgctttatttctgataatattctcac-ttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaac |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || | | |||||||| ||||| |||||||||||| |||| |
|
|
| T |
16880331 |
gtgctttatttctgataatattctcacattcatttctgaaactcgcatcaaaagatgacacttttacttcatagttgtgaaatttctttaaggcggcaac |
16880232 |
T |
|
| Q |
215 |
cttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtcca |
312 |
Q |
| |
|
|||| | ||||||| | | |||||| |||||||||||||||| ||| || ||||||||||| |||||||||| || |||| |||| || ||||||| |
|
|
| T |
16880231 |
tttgcaagatggtaatcgagtcttgtatacacttccatatgctcttgtgccgatgcaatatctaatgtcaaagtgttgtgtttctttaataatgtcca |
16880134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 8873066 - 8873340
Alignment:
| Q |
15 |
tcatacaagatagagaacaagcttcgtttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaa-tccataaagcttcacaatatgt |
113 |
Q |
| |
|
|||||||| || |||||||| ||| ||| | ||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| | ||||| | |
|
|
| T |
8873066 |
tcatacaaaatcgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttgtgcaagcaaaaatccataaagcttaataatattt |
8873165 |
T |
|
| Q |
114 |
cggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaa |
213 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||||||| ||||||| |||| || |||||||||||| ||||||||||||||||| ||| |
|
|
| T |
8873166 |
atctgctttattttttataatattctcacttcaattctgaaactggcatcaaacgatgacacatctgcttcatagttgtgaagtttctttaaggtcgcaa |
8873265 |
T |
|
| Q |
214 |
ccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
288 |
Q |
| |
|
||||||| || |||||| | |||||| ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
8873266 |
atttgccacatgataattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
8873340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 47 - 257
Target Start/End: Complemental strand, 36620712 - 36620505
Alignment:
| Q |
47 |
catgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttca |
146 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
36620712 |
catgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
36620613 |
T |
|
| Q |
147 |
tttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaaccttgccacttggtaattgtgccttgtaaacac |
246 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||| |||| ||||||||||||||||| ||| ||||||| || |||||| | |||||| | || |
|
|
| T |
36620612 |
attctgaaactcgcatcaaaagat---acatctgcttaatagttgtgaagtttctttaaggtggcaaatttgccacatgataattgagtcttgtataaac |
36620516 |
T |
|
| Q |
247 |
ttccatatgct |
257 |
Q |
| |
|
||||||||||| |
|
|
| T |
36620515 |
ttccatatgct |
36620505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 47 - 257
Target Start/End: Original strand, 39102292 - 39102501
Alignment:
| Q |
47 |
catgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttca |
146 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||| |||||||||||||| ||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
39102292 |
catgtattgatatattaaaaacatgcttcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
39102391 |
T |
|
| Q |
147 |
tttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaaccttgccacttggtaattgtgccttgtaaacac |
246 |
Q |
| |
|
|||| ||||| |||||||||||| || ||||||| |||| |||||| |||||||||| ||| ||||||| || |||||| | |||||| | || |
|
|
| T |
39102392 |
attctaaaactcgcatcaaaagatgacacatctgcttaatagttgtgaag-ttctttaaggaggcaaatttgccacatgataattgagtcttgtataaac |
39102490 |
T |
|
| Q |
247 |
ttccatatgct |
257 |
Q |
| |
|
||||||||||| |
|
|
| T |
39102491 |
ttccatatgct |
39102501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 47 - 288
Target Start/End: Complemental strand, 31658124 - 31657883
Alignment:
| Q |
47 |
catgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttca |
146 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
31658124 |
catgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
31658025 |
T |
|
| Q |
147 |
tttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaaccttgccacttggtaattgtgccttgtaaacac |
246 |
Q |
| |
|
|||||||| | |||||||||||| || ||| ||| ||| ||||||||||||||||| |||| ||||||| || |||||| | |||||| |||| |
|
|
| T |
31658024 |
attctgaaattcgcatcaaaagatgacacatctatttcgtagttgtgaagtttctttaaggtgacaaatttgccacatgataattgagtcttgtatacac |
31657925 |
T |
|
| Q |
247 |
ttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
288 |
Q |
| |
|
|||||| |||| ||| | ||||||||||| |||||||||| |
|
|
| T |
31657924 |
ttccatgtgcttatgtcacgatgcaatatctaatgtcaaagt |
31657883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 47 - 288
Target Start/End: Complemental strand, 1257918 - 1257677
Alignment:
| Q |
47 |
catgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttca |
146 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| || ||| ||||||| || ||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
1257918 |
catgtattgatagattaaaaacatgattcttttgtgcaaacaaaattcataaagtttaacaatatttatctgctttatttttgataatattctcacttca |
1257819 |
T |
|
| Q |
147 |
tttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggcaacaaccttgccacttggtaattgtgccttgtaaacac |
246 |
Q |
| |
|
|||||||||| |||||||| ||| || ||||||||||| ||||||||||||||||| ||| | ||||| || |||||| | |||||| |||| |
|
|
| T |
1257818 |
attctgaaactcgcatcaaaaaatgacacatctgcttcatatttgtgaagtttctttaaggtggcaaattggccacatgataattgagtcttgtatacac |
1257719 |
T |
|
| Q |
247 |
ttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
288 |
Q |
| |
|
|| |||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
1257718 |
tttcatatgcttatgtcacgatgcaatatctaatgtcaaagt |
1257677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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