View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18336_low_27 (Length: 303)
Name: NF18336_low_27
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 21721288 - 21721584
Alignment:
| Q |
1 |
ctccatttatattttgttaaatggtgaagatccttacttctggtatagtatagttagaggaagcaattttgataagaaaataaaactagctagcacgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
21721288 |
ctccatttatattttgttaaatggtgaacatccttacttctggtatagtatagttagaggaagcaattttcataagaaaataaaactagctagcccgcag |
21721387 |
T |
|
| Q |
101 |
aagaaacacttgcatgagaaattttgaataaaaattaggtagacattagacaagttaattaatagtcaaaagggcaagaa-gctattggaagataatttg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
21721388 |
aagaaacacttgcatgagaaattttgaataaaaattaggtagacattagacaagttaattaatagtcaaaagggcaagaaggcaattggaagataatttg |
21721487 |
T |
|
| Q |
200 |
tgtccaaataagaagatatattatggggcatgccaattcacaaattgcaaagacaaaagaaaacacgttccaaggagttgaattccctttcttctca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21721488 |
tgtccaaataagaagatatattatggggcatgccaattcacaaattgcaaagacaaaagaaaacacgttccaatgagttgaattccctttcttctca |
21721584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University