View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_low_28 (Length: 295)
Name: NF18336_low_28
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 36464389 - 36464656
Alignment:
| Q |
9 |
gagatgaagtatttgaaagcttgtttgtgcgaatcgatgaggttgtatccaccggtggcgtgggattcgaagcatgctgccaacaatgatgtgttgccgg |
108 |
Q |
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| T |
36464389 |
gagatgaagtatttgaaagcttgtttgtgcgaatcgatgaggttgtatccaccggtggcgtgggattcgaagcatgctgccaacaatgatgtgttgccgg |
36464488 |
T |
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| Q |
109 |
atggaactagggttgggaaaggtgatagggtgacttattttccttatgggatggggaggatggaggccttatggggtaaagattggaatgagtttaaacc |
208 |
Q |
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| T |
36464489 |
atggaactagggttgggaaaggtgatagggtgacttattttccttatgggatggggaggatggaggccttatggggtaaagattggaatgagtttaaacc |
36464588 |
T |
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| Q |
209 |
agagcggtggtttgaagaaccgatcgaagaaggaggtaataataacgagggggttttgaaatatgtga |
276 |
Q |
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| T |
36464589 |
agagcggtggtttgaagaaccgatcgaagaaggaggtaataataacgagggggttttgaaatatgtga |
36464656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 36474694 - 36474814
Alignment:
| Q |
154 |
atgggatggggaggatggaggccttatggggtaaagattggaatgagtttaaaccagagcggtggtttgaagaaccgatcgaagaaggaggtaataataa |
253 |
Q |
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| T |
36474694 |
atgggatggggaggatggatgtgttatggggtaaagattggaatgagtttaaaagagaccgctcgtttgatgaactcatcaaagaaagaggtaataataa |
36474793 |
T |
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| Q |
254 |
cga-gggggttttgaaatatg |
273 |
Q |
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| T |
36474794 |
cgatggtggttttaaaatatg |
36474814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 36474581 - 36474665
Alignment:
| Q |
12 |
atgaagtatttgaaagcttgtttgtgcgaatcgatgaggttgtatccaccggtggcgtgggattcgaagcatgctgccaacaatga |
97 |
Q |
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| T |
36474581 |
atgaagcatttggaagcatgtttgtgtgagtcaatgaggttgtatccacttgt-gcgtgggatttgaagcatgtcgccaacaatga |
36474665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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