View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_low_29 (Length: 293)
Name: NF18336_low_29
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_low_29 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 5447116 - 5446831
Alignment:
| Q |
10 |
acatcatcacaacgtaattataacaattcttgcattattgcataaccattagtttctctaggatagaaattaagcataaactagac--gagaatttcata |
107 |
Q |
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| T |
5447116 |
acatcatcacaacgtaattataacaattcttgcattattgcataaccattagtttctctaggatagaaattaagcataaactagacaagagaatttcata |
5447017 |
T |
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| Q |
108 |
gacactaattgattaacaaagctcaaacaattttacattgcttcacactcaagaaacttgttcttaaatcttttacctagcatcacaattagagaaactt |
207 |
Q |
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| T |
5447016 |
gacactaattgattaacaaagttcaaacaattttacattgcttcacactcaagaaacttgttcttaaatcttttacctagcatcacaattagagaaactt |
5446917 |
T |
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| Q |
208 |
catactattttccaactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctgtcaaaccattctatactttcct |
293 |
Q |
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| T |
5446916 |
catactattttccaactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctttcaaaccattctatactttcct |
5446831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 5431986 - 5432040
Alignment:
| Q |
103 |
tcatagacactaattgattaacaaagctcaaacaattttacattgcttcacactc |
157 |
Q |
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| T |
5431986 |
tcatagacactaattgagtaatgaagctcaaactattttacattgcttcagactc |
5432040 |
T |
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