View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_low_33 (Length: 274)

Name: NF18336_low_33
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_low_33
NF18336_low_33
[»] chr1 (2 HSPs)
chr1 (152-266)||(39367135-39367249)
chr1 (191-266)||(12190688-12190762)
[»] chr2 (2 HSPs)
chr2 (174-252)||(27150272-27150350)
chr2 (216-266)||(7703425-7703475)
[»] chr4 (2 HSPs)
chr4 (180-266)||(24558121-24558205)
chr4 (152-201)||(24558071-24558121)
[»] chr5 (1 HSPs)
chr5 (198-246)||(31571741-31571789)
[»] chr6 (1 HSPs)
chr6 (183-246)||(24631335-24631398)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 39367135 - 39367249
Alignment:
Q  152 gtggctcacaatgagtttgtcttttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgt 251  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |||||||||| || ||||    
T  39367135 gtggctcgcaatgagtttgttttttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaaaaaatgtttaacatgattcttgtgt 39367234  T
Q  252 tttcctgttcatctc 266  Q
    | |||||||||||||    
T  39367235 tgtcctgttcatctc 39367249  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 12190762 - 12190688
Alignment:
Q  191 taggaagtcttatgagtgagtgttgttattgttgaacaaga-aattaacatgatcctcgtgttttcctgttcatctc 266  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||| ||||  |||| |||||||||||||    
T  12190762 taggaagtcttatgagtgagtgttgttattgttgaacaagagttttaacatgttcct--tgttatcctgttcatctc 12190688  T

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Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 27150272 - 27150350
Alignment:
Q  174 tttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgtt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  27150272 tttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagagtttaacatgatccttgtgtt 27150350  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 7703475 - 7703425
Alignment:
Q  216 ttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctc 266  Q
    ||||||||||||||||  ||||||||||||| ||||| |||||||||||||    
T  7703475 ttattgttgaacaagagtttaacatgatccttgtgttgtcctgttcatctc 7703425  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 24558121 - 24558205
Alignment:
Q  180 ttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||  |||| || ||||||||||    
T  24558121 ttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagagcttaacacgatcct--tgttgtcttgttcatctc 24558205  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 24558071 - 24558121
Alignment:
Q  152 gtggctcacaatgagtttgtcttt-tgagttattaatgtgtaggaagtctt 201  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  24558071 gtggctctcaatgagtttgtctttctgagttattaatgtgtaggaagtctt 24558121  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 31571789 - 31571741
Alignment:
Q  198 tcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 246  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  31571789 tcttatgagtgagtgttgttattgttgaacaagagtttaacatgatcct 31571741  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 24631335 - 24631398
Alignment:
Q  183 ttaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 246  Q
    ||||| ||||| || ||||||||||||| |||||| |||||||||||||  |||| ||||||||    
T  24631335 ttaatttgtagaaaatcttatgagtgagagttgttcttgttgaacaagagtttaatatgatcct 24631398  T

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