View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_low_35 (Length: 255)

Name: NF18336_low_35
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_low_35
NF18336_low_35
[»] chr4 (24 HSPs)
chr4 (10-196)||(18716199-18716385)
chr4 (16-196)||(32429589-32429769)
chr4 (10-196)||(3415457-3415643)
chr4 (10-196)||(18736872-18737058)
chr4 (10-196)||(18670554-18670741)
chr4 (10-196)||(3425005-3425191)
chr4 (10-196)||(30020156-30020341)
chr4 (56-194)||(35095787-35095925)
chr4 (61-196)||(34279796-34279932)
chr4 (77-194)||(35090695-35090812)
chr4 (62-196)||(14646573-14646707)
chr4 (100-185)||(47071212-47071297)
chr4 (62-155)||(34128562-34128655)
chr4 (132-194)||(54859464-54859525)
chr4 (212-255)||(35090868-35090911)
chr4 (212-255)||(35095981-35096024)
chr4 (221-255)||(34279699-34279733)
chr4 (212-255)||(32429491-32429534)
chr4 (221-255)||(3415360-3415394)
chr4 (221-255)||(3424908-3424942)
chr4 (222-255)||(18670803-18670836)
chr4 (10-59)||(20251625-20251674)
chr4 (18-59)||(24129189-24129230)
chr4 (212-248)||(14646483-14646519)
[»] chr6 (17 HSPs)
chr6 (10-196)||(24509133-24509319)
chr6 (10-195)||(21937283-21937468)
chr6 (31-196)||(24509437-24509602)
chr6 (10-194)||(21936987-21937171)
chr6 (33-192)||(2887230-2887389)
chr6 (62-194)||(21275538-21275670)
chr6 (75-195)||(12909407-12909527)
chr6 (33-192)||(2888952-2889111)
chr6 (75-195)||(12934514-12934634)
chr6 (62-196)||(20752423-20752556)
chr6 (212-255)||(20752326-20752369)
chr6 (212-255)||(21275726-21275769)
chr6 (212-255)||(24509036-24509079)
chr6 (212-255)||(24509656-24509699)
chr6 (10-53)||(28612001-28612044)
chr6 (221-251)||(21937532-21937562)
chr6 (10-59)||(24075660-24075709)
[»] chr5 (19 HSPs)
chr5 (16-194)||(43378156-43378334)
chr5 (10-196)||(2022672-2022862)
chr5 (56-194)||(39908717-39908855)
chr5 (56-194)||(9872731-9872869)
chr5 (33-196)||(35369207-35369370)
chr5 (61-194)||(9877846-9877979)
chr5 (62-194)||(39903610-39903742)
chr5 (62-194)||(13556612-13556744)
chr5 (77-196)||(25183874-25183997)
chr5 (16-59)||(9851303-9851346)
chr5 (212-255)||(9872632-9872675)
chr5 (212-255)||(9877747-9877790)
chr5 (212-255)||(13556513-13556556)
chr5 (212-255)||(35369099-35369142)
chr5 (212-255)||(39903798-39903841)
chr5 (212-255)||(39908911-39908954)
chr5 (89-161)||(4553655-4553727)
chr5 (212-255)||(2022917-2022960)
chr5 (16-59)||(29006700-29006743)
[»] chr8 (20 HSPs)
chr8 (10-196)||(25953464-25953650)
chr8 (56-194)||(26982183-26982321)
chr8 (56-194)||(34107988-34108126)
chr8 (75-194)||(18608935-18609054)
chr8 (56-194)||(14315218-14315356)
chr8 (77-194)||(14318922-14319039)
chr8 (61-194)||(26987296-26987429)
chr8 (77-194)||(43957156-43957273)
chr8 (68-196)||(10341262-10341389)
chr8 (62-192)||(18884829-18884959)
chr8 (212-255)||(14315119-14315162)
chr8 (212-255)||(14318823-14318866)
chr8 (212-255)||(18608836-18608879)
chr8 (212-255)||(26982084-26982127)
chr8 (212-255)||(26987197-26987240)
chr8 (212-255)||(34108182-34108225)
chr8 (221-255)||(43957057-43957091)
chr8 (212-255)||(10341165-10341208)
chr8 (212-255)||(25953367-25953410)
chr8 (56-113)||(19183897-19183956)
[»] chr7 (25 HSPs)
chr7 (10-196)||(5436836-5437021)
chr7 (56-194)||(12856548-12856686)
chr7 (56-194)||(14615189-14615327)
chr7 (56-194)||(26055893-26056031)
chr7 (56-194)||(26065252-26065390)
chr7 (61-194)||(26050785-26050918)
chr7 (61-194)||(26060144-26060277)
chr7 (62-194)||(14610129-14610261)
chr7 (62-196)||(11056390-11056524)
chr7 (61-194)||(35352598-35352731)
chr7 (62-194)||(12851439-12851571)
chr7 (62-196)||(4181686-4181820)
chr7 (98-196)||(37460146-37460243)
chr7 (10-59)||(12239475-12239524)
chr7 (212-255)||(12851627-12851670)
chr7 (212-255)||(12856742-12856785)
chr7 (212-255)||(26050974-26051017)
chr7 (212-255)||(26056087-26056130)
chr7 (212-255)||(26060333-26060376)
chr7 (212-255)||(26065446-26065489)
chr7 (221-255)||(5436738-5436772)
chr7 (221-255)||(14610326-14610360)
chr7 (157-190)||(12239536-12239569)
chr7 (10-55)||(23757023-23757068)
chr7 (10-59)||(37469092-37469141)
[»] chr1 (28 HSPs)
chr1 (10-196)||(21431971-21432156)
chr1 (10-196)||(35624730-35624916)
chr1 (10-196)||(43358464-43358650)
chr1 (10-196)||(44524324-44524509)
chr1 (10-194)||(10186883-10187067)
chr1 (10-196)||(29681304-29681488)
chr1 (10-194)||(48366359-48366542)
chr1 (75-196)||(16050984-16051105)
chr1 (56-194)||(28598068-28598206)
chr1 (68-196)||(13654106-13654234)
chr1 (62-194)||(28574062-28574194)
chr1 (76-196)||(1187606-1187727)
chr1 (79-196)||(19310607-19310724)
chr1 (96-194)||(3465272-3465370)
chr1 (110-194)||(17415492-17415576)
chr1 (212-255)||(1187781-1187824)
chr1 (212-255)||(3465426-3465469)
chr1 (212-255)||(3468020-3468063)
chr1 (212-255)||(13654288-13654331)
chr1 (212-255)||(28574250-28574293)
chr1 (212-255)||(28598262-28598305)
chr1 (221-255)||(29681552-29681586)
chr1 (10-54)||(19310562-19310606)
chr1 (158-190)||(49053964-49053996)
chr1 (212-255)||(10186791-10186834)
chr1 (221-252)||(48366262-48366293)
chr1 (16-59)||(49061589-49061632)
chr1 (16-57)||(49054011-49054052)
[»] chr3 (40 HSPs)
chr3 (10-194)||(29827141-29827326)
chr3 (56-194)||(5458319-5458457)
chr3 (56-194)||(31076709-31076847)
chr3 (62-194)||(4049572-4049704)
chr3 (56-194)||(4054700-4054838)
chr3 (56-194)||(6853259-6853397)
chr3 (60-194)||(8458074-8458208)
chr3 (56-194)||(8464509-8464647)
chr3 (56-194)||(10586489-10586627)
chr3 (60-194)||(10591602-10591736)
chr3 (56-194)||(10673245-10673383)
chr3 (56-194)||(33702907-33703045)
chr3 (62-194)||(5481795-5481927)
chr3 (60-194)||(6858362-6858496)
chr3 (61-194)||(1302552-1302685)
chr3 (77-194)||(10678360-10678477)
chr3 (61-194)||(31081814-31081947)
chr3 (67-194)||(33703070-33703197)
chr3 (8-186)||(49784203-49784375)
chr3 (75-196)||(20890839-20890959)
chr3 (212-255)||(4054894-4054937)
chr3 (10-59)||(52653989-52654038)
chr3 (212-255)||(1302453-1302496)
chr3 (212-255)||(4049760-4049803)
chr3 (212-255)||(5458220-5458263)
chr3 (212-255)||(5481696-5481739)
chr3 (212-255)||(6853160-6853203)
chr3 (212-255)||(6858263-6858306)
chr3 (212-255)||(8458264-8458307)
chr3 (212-255)||(8464703-8464746)
chr3 (212-255)||(10673146-10673189)
chr3 (212-255)||(10678261-10678304)
chr3 (212-255)||(33702808-33702851)
chr3 (212-255)||(33703252-33703295)
chr3 (221-255)||(10591503-10591537)
chr3 (95-182)||(3187771-3187858)
chr3 (212-255)||(10586390-10586433)
chr3 (212-255)||(29827382-29827425)
chr3 (212-255)||(31076610-31076653)
chr3 (212-255)||(31081715-31081758)
[»] chr2 (13 HSPs)
chr2 (10-165)||(716075-716229)
chr2 (52-196)||(42779938-42780082)
chr2 (76-196)||(16284215-16284335)
chr2 (60-194)||(39196179-39196313)
chr2 (61-194)||(17720833-17720966)
chr2 (62-194)||(14917689-14917821)
chr2 (77-194)||(45120166-45120283)
chr2 (60-194)||(30283748-30283870)
chr2 (212-255)||(14917590-14917633)
chr2 (212-255)||(17720734-17720777)
chr2 (212-255)||(30283649-30283692)
chr2 (212-255)||(45120339-45120382)
chr2 (212-255)||(16284390-16284433)
[»] scaffold0391 (2 HSPs)
scaffold0391 (60-194)||(16370-16504)
scaffold0391 (61-151)||(16276-16366)
[»] scaffold0006 (2 HSPs)
scaffold0006 (68-196)||(143867-143995)
scaffold0006 (212-255)||(144049-144092)
[»] scaffold0223 (2 HSPs)
scaffold0223 (62-194)||(7284-7416)
scaffold0223 (212-255)||(2227-2270)
[»] scaffold0005 (2 HSPs)
scaffold0005 (62-196)||(170583-170717)
scaffold0005 (212-248)||(170771-170807)
[»] scaffold0756 (1 HSPs)
scaffold0756 (62-163)||(3910-4011)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 18716199 - 18716385
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||| ||||||||  |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||    
T  18716199 aagaagatgattaagatgaacttgatgaagtgtgtacataaattccaaagattgttgtatatcttgattgttgggaagatgctgctgcacttgaaacctg 18716298  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| ||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18716299 aaaagtttaatggtaatgcatgtaaaactcaaagcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 18716385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 32429769 - 32429589
Alignment:
Q  16 atgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaat 115  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| |||||||||||| | |  ||||||||||||||||||||| |    
T  32429769 atgatgaagatgaacatgatgaagtgtgcacataaattctaaagattgtagtatatcttgattgttgggaagatgtggctgcacttgaaacctgaaaatt 32429670  T
Q  116 ttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32429669 ttaatggttatgcatgtaaaactcaaagcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 32429589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 3415643 - 3415457
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | | || |||||||||||||||    
T  3415643 aagaagatgatgaagatgaacatgatgaagtgtgcacataaattccaaagattgttgtatatcttgattgttgggaagatgttgttgcacttgaaacctg 3415544  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| ||||||  | || ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  3415543 aaaagtttaattatcatgcatgtaaaactcaaagcgcatgggattgccacactaacctttaggttcaattcgcccccaccaataact 3415457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 18736872 - 18737058
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||| ||    
T  18736872 aagaagatgattaagatgaacttgatgaagtgtgcacataaattccaaagattgttgtatatcttgattgttgggaagatgctgctgcacttgaaacttg 18736971  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| |||||||||||| ||||||||||||||| |||||| ||| |||| |||||||||||||||| ||||||||||||||||||||    
T  18736972 aaaagtttaatggttatgcatgtaaaactcaaagcgcatgaggtagccaaactaacctttaggttcaattcgcccccaccaataact 18737058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 18670554 - 18670741
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||   ||||||||||||||||||||    
T  18670554 aagaagatgataaagatgaacatgatgaagtgtgcacataaatttcaaagattgttgtatatcttgattgttgggaagttgctgctgcacttgaaacctg 18670653  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgc-ccccaccaataact 196  Q
    |||| |||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  18670654 aaaagtttaatggttatgcatgtaaaattcaaagcgcatggagttgccacactaacctttaggttcgattcacaccccaccaataact 18670741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 3425191 - 3425005
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||| |||||||||||| |   || |||||||||||||||    
T  3425191 aagaagatgatgaagatgaacatgataaagtgtgcacataaattccaaagaatgttgtatatcttgattgttgggaagattgtgttgcacttgaaacctg 3425092  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| ||||||  |||| |||| |||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||    
T  3425091 aaaagtttaattattatgcatgcaaaactcaaagcgcatgggattgtcacactaacctttaggttcgattctcccccaccaataact 3425005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 30020341 - 30020156
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||| ||| |||||| | ||||| |||||||| ||| | |||| |||||||||||||||    
T  30020341 aagaagatgatgaagatgactatgatgaagtgtgcatataaattcaaaatattgttgtctatcttgattgttgagaagatgctgttgcacttgaaacctg 30020242  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| || ||||||||| ||||||||||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||||||||    
T  30020241 aaaagttcaatggttatgcatgtaaaactcaaagcgcatggggttaccatattaaccttt-ggttcgattcgcccccaccaataact 30020156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 35095787 - 35095925
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  35095787 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 35095886  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35095887 ccacactaacctttaggttcgattcgcccccaccaataa 35095925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 34279932 - 34279796
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaattt-aatggttattcatgtaaaactcaaatcgcatggggttgccac 159  Q
    ||||| ||||||| | |||| ||||| |||| ||||||||||||||||||||  ||| ||||||||| ||||||||||||||| |||||||| ||| |||    
T  34279932 ttgttatatatcttgtttgtagggaagaggcggctgcacttgaaacctgaaacgttttaatggttatgcatgtaaaactcaaagcgcatgggattgtcac 34279833  T
Q  160 actaacctttaggttcgattcgcccccaccaataact 196  Q
    |||||||||||| ||||||||||||||||||||||||    
T  34279832 actaacctttagcttcgattcgcccccaccaataact 34279796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 35090695 - 35090812
Alignment:
Q  77 ttgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcg 176  Q
    |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||| | |||  | ||||||||||||||||||||||||||||||    
T  35090695 ttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaatttaaagtgtatggggttgccacactaacctttaggttcg 35090794  T
Q  177 attcgcccccaccaataa 194  Q
    ||||||||||||||||||    
T  35090795 attcgcccccaccaataa 35090812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 14646707 - 14646573
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| ||||||| |||  | |||||||||||||||| ||||||| |||||||||||| ||||||||||| ||| | ||||||||| ||||||    
T  14646707 tgttatatatcttgattgttaggatgaagctgctgcacttgaaatctgaaaagtttaatggttatgcatgtaaaacttaaagctcatggggtttccacac 14646608  T
Q  162 taacctttaggttcgattcgcccccaccaataact 196  Q
    | |||||||||||||||| |||||||| |||||||    
T  14646607 tgacctttaggttcgatttgcccccactaataact 14646573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 47071212 - 47071297
Alignment:
Q  100 ttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccc 185  Q
    |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  47071212 ttgaaacctgaaaagtttaatggttatgcatgtaaaactcaaagcgcatggggttgccacactaacctttaggttcgattcacccc 47071297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 34128655 - 34128562
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||| ||||||| |||||||||||| || |||||||||||||||||| |||| |||||||||||| |||||||||||||||  |||| ||||||    
T  34128655 tgttatatatcttgattgttgggaagagactgctgcacttgaaaccttaaaagtttaatggttatgcatgtaaaactcaaagtgcatagggttg 34128562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 54859525 - 54859464
Alignment:
Q  132 taaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| |||||  |||||||||||    
T  54859525 taaaactcaaagcgcatggggttgccacactaacctttatgttcaattcg-tcccaccaataa 54859464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 35090868 - 35090911
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  35090868 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 35090911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 35095981 - 35096024
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  35095981 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 35096024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 34279733 - 34279699
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||||||||||||||||||||||||||||||    
T  34279733 gtgtattgcacaaccacaccaagcgtatctcctaa 34279699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 32429534 - 32429491
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | ||||||||||||||||||| |||||||||||||||    
T  32429534 ttccttgacgtgtattgcacaaccacacaaagcgtatctcctaa 32429491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 3415394 - 3415360
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||||||||||||||||| ||||||||||||    
T  3415394 gtgtattgcacaaccacaccaaccgtatctcctaa 3415360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 3424942 - 3424908
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||||||||||||||||| ||||||||||||    
T  3424942 gtgtattgcacaaccacaccaaccgtatctcctaa 3424908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 18670803 - 18670836
Alignment:
Q  222 tgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||||||||||||||||| |||||||||||    
T  18670803 tgtattgcacaaccacaccaagtgtatctcctaa 18670836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 20251674 - 20251625
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaag 59  Q
    ||||| |||||||||||||| ||||||||| || |||||||||| |||||    
T  20251674 aagaagatgatgaagatgaacatgatgaagagtacacataaatttcaaag 20251625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 24129189 - 24129230
Alignment:
Q  18 gatgaagatgaatatgatgaagtgtgcacataaattccaaag 59  Q
    ||||| |||||||||||||||  |||||||||||||||||||    
T  24129189 gatgatgatgaatatgatgaaaagtgcacataaattccaaag 24129230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 14646519 - 14646483
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtat 248  Q
    |||||||| |||||||||| |||||||||||||||||    
T  14646519 ttccttaatgtgtattgcagaaccacaccaagcgtat 14646483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 24509319 - 24509133
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||||||||||| ||||||||||| |||| ||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |     
T  24509319 aagaagatgatgaagatgagtatgatgaagtttgcaaataaatttcaaagattgttatatatcttgattgttgggaagaggctgctgcacttgaaacttc 24509220  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24509219 aaaagtttaatggttatgcatgtaaaactcaaaacgcatggggttgccatactaacctttaggttcgattcgcccccaccaataact 24509133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 21937283 - 21937468
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||||| || ||| |||||||||||||||    
T  21937283 aagaagatgatgaagatgaatatgatgaagtgtgcacataaattacaaagatttttgtatatcttgattgttgggaagagactgttgcacttgaaacctg 21937382  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataac 195  Q
    |||| ||||||||| || ||| ||||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  21937383 aaaagtttaatggtaatgcatataaaactcaaagcgcatggggtttccatactaacctttaggctcgattcgcccccaccaataac 21937468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 24509437 - 24509602
Alignment:
Q  31 atgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcat 130  Q
    ||||||||| ||||||| ||||| |||| |||||| ||||||| |||||||||||| ||| || |||||||||||||| |||| |||||||||||| |||    
T  24509437 atgatgaagagtgcacaaaaatttcaaatattgttgtatatcttgattgttgggaagaggttgttgcacttgaaaccttaaaagtttaatggttatgcat 24509536  T
Q  131 gtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24509537 gtaaaactcaaatcgcatggggttgccatactaacctttaggttcgattcgcccccaccaataact 24509602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 21937171 - 21936987
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||| ||||| ||||| ||||||||| |||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||||  |    
T  21937171 aagaagatgattaagattaatataatgaagtgtacacataaatttcaaagattgttttatatcttgattgttgggaacaggttgctgcacttgaaactcg 21937072  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||| |||||||||||| |||||||||||||||  |||| ||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  21937071 aaaagtttaatggttatgcatgtaaaactcaaagtgcatagggtttccatactaacctttaggctcgattcgtccccaccaataa 21936987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 2887230 - 2887389
Alignment:
Q  33 gatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgt 132  Q
    ||||||||||||||||| |||| ||| |||||| ||||||| ||||||||  || | | |||||||||||||||||||||| ||||||||||||  ||||    
T  2887230 gatgaagtgtgcacatatattctaaatattgttgtatatcttgattgttgaaaagaagttgctgcacttgaaacctgaaaagtttaatggttatgtatgt 2887329  T
Q  133 aaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaat 192  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  2887330 aaaactcaaagcgcatggggttgtcacactaacatttaggttcgattcgcccccaccaat 2887389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 21275538 - 21275670
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||||    
T  21275538 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 21275637  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||    
T  21275638 taacctttaggttcgattcgcccccaccaataa 21275670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 12909407 - 12909527
Alignment:
Q  75 gattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggtt 174  Q
    |||||||||||| |||| ||||||||| |||||||||||| ||||| ||||| ||||||||  ||||| |||||||||||||||||||||||||||||||    
T  12909407 gattgttgggaagaggcggctgcacttaaaacctgaaaaaattaatcgttatgcatgtaaacttcaaagcgcatggggttgccacactaacctttaggtt 12909506  T
Q  175 cgattcgcccccaccaataac 195  Q
    |||||||||||||||||||||    
T  12909507 cgattcgcccccaccaataac 12909527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 2888952 - 2889111
Alignment:
Q  33 gatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgt 132  Q
    |||||| |||||||||| |||| ||| |||||| ||||||| ||||||||  || | | |||||||||||||| ||| ||| ||||||||||||  ||||    
T  2888952 gatgaaatgtgcacatatattctaaatattgttgtatatcttgattgttgaaaagaagttgctgcacttgaaatctggaaagtttaatggttatgaatgt 2889051  T
Q  133 aaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaat 192  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  2889052 aaaactcaaagcgcatggggttgtcacactaacatttaggttcgattcgcccccaccaat 2889111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 12934514 - 12934634
Alignment:
Q  75 gattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggtt 174  Q
    |||||||||||| |||| ||||||||| |||||||||||| |||||  |||| ||||||||  ||||| ||||||||||||||||||||||||||| |||    
T  12934514 gattgttgggaagaggcggctgcacttaaaacctgaaaaaattaatcattatgcatgtaaacttcaaagcgcatggggttgccacactaacctttatgtt 12934613  T
Q  175 cgattcgcccccaccaataac 195  Q
    |||||||||||||||||||||    
T  12934614 cgattcgcccccaccaataac 12934634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 20752556 - 20752423
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | ||||||||| | ||||| ||||||||||||||||||  ||||||| |||| ||||||||||||||| | ||||||||||||| ||    
T  20752556 tgttatatatcttgtttgttgggaga-ggctgttgcacttgaaacctgaaatgtttaatgattatgcatgtaaaactcaaagcacatggggttgccatac 20752458  T
Q  162 taacctttaggttcgattcgcccccaccaataact 196  Q
    ||||||||||||||||||||||||||| |||||||    
T  20752457 taacctttaggttcgattcgcccccacaaataact 20752423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 20752369 - 20752326
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  20752369 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 20752326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 21275726 - 21275769
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  21275726 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 21275769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 24509079 - 24509036
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  24509079 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 24509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 24509656 - 24509699
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | ||||||||||||||||||||| |||||||||||||    
T  24509656 ttccttgatgtgtattgcacaaccacaccatgcgtatctcctaa 24509699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 28612001 - 28612044
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaatt 53  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||    
T  28612001 aagaagatgatgaatatgaacatgatgaagtgtgcacataaatt 28612044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 251
Target Start/End: Original strand, 21937532 - 21937562
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctc 251  Q
    |||||||||||||||||||||||||||||||    
T  21937532 gtgtattgcacaaccacaccaagcgtatctc 21937562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 24075660 - 24075709
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaag 59  Q
    ||||| ||||| |||||||||||||  ||||||||| |||||||||||||    
T  24075660 aagaagatgataaagatgaatatgacaaagtgtgcatataaattccaaag 24075709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 43378156 - 43378334
Alignment:
Q  16 atgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaat 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| | | ||||||||||||||| |||||| |    
T  43378156 atgatgaagatgaatatgatgaagtgtgcacataaatttcaaagattgttgtatatcttgattgttgggaagaagttgctgcacttgaaacttgaaaagt 43378255  T
Q  116 ttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  43378256 ttaatggttatgcatgtaaaactcaaagcgcatggggttgtcacactaacatttaggttcgatttacccccaccaataa 43378334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 2022672 - 2022862
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctc----gattgttgggaaaaggctgctgcacttgaaa 105  Q
    ||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||     ||||||||  || | ||||||||||||||||    
T  2022672 aagaagatgatgaagatgaacatgatgaaatgtgcacataaatttcaaagattgttgtatatctatcttgattgttgtaaagatgctgctgcacttgaaa 2022771  T
Q  106 cctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||||||| |||||||||||| ||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||||    
T  2022772 cctgaaaagtttaatggttatgcatgtaaaactcaaagcgcatgaggttgccatactaacctttaggttccattcgcccccaccaataact 2022862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 39908717 - 39908855
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  39908717 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 39908816  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39908817 ccacactaacctttaggttcgattcgcccccaccaataa 39908855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 9872869 - 9872731
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || |||||||||||||||  | |||||||||    
T  9872869 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagtgtatggggttg 9872770  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9872769 ccacactaacctttaggttcgattcgcccccaccaataa 9872731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 35369370 - 35369207
Alignment:
Q  33 gatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgt 132  Q
    |||||| | ||||||||||||| |||||||||| ||||||| |||||||   || || ||||||||||||||||||||||| |||||||||||| |||||    
T  35369370 gatgaaatatgcacataaattcgaaagattgttgtatatcttgattgtt---aagagactgctgcacttgaaacctgaaaagtttaatggttatgcatgt 35369274  T
Q  133 aaaactcaaatcgcat---ggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||||||||| |||||   |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  35369273 aaaactcaaagcgcatatgggggttgccacactaatctttaggttcgattcgcacccaccaataact 35369207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 9877979 - 9877846
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccaca 160  Q
    ||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || |||||||||||||||  | ||||||||||||||    
T  9877979 ttgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagtgtatggggttgccaca 9877880  T
Q  161 ctaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||||||||||||||||||||||||||    
T  9877879 ctaacctttaggttcgattcgcccccaccaataa 9877846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 39903610 - 39903742
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | ||||||| || |||||||||||||||||||| ||||  ||||||| | || ||||||||||||||| || |||||||||||||||    
T  39903610 tgttatatatcttgtttgttggaaagaggctgctgcacttgaaacccgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 39903709  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||    
T  39903710 taacctttaggttcgattcgcccccaccaataa 39903742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 13556744 - 13556612
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| ||| | |||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||||    
T  13556744 tgttatatatcttgtttgttgggaagaggttactgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 13556645  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||| || |||||||||||||||||||||    
T  13556644 taaccttttggctcgattcgcccccaccaataa 13556612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 25183874 - 25183997
Alignment:
Q  77 ttgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatg----gggttgccacactaacctttagg 172  Q
    ||||| |||| ||||| |||||||||||||||||||  ||||||| |||| ||||||||||| ||| ||||||    |||||||||||||| ||||||||    
T  25183874 ttgttcggaagaggcttctgcacttgaaacctgaaatctttaatgattatgcatgtaaaactgaaagcgcatgggccgggttgccacactatcctttagg 25183973  T
Q  173 ttcgattcgcccccaccaataact 196  Q
    |||||||| |||||||||||||||    
T  25183974 ttcgattctcccccaccaataact 25183997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 9851303 - 9851346
Alignment:
Q  16 atgatgaagatgaatatgatgaagtgtgcacataaattccaaag 59  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  9851303 atgatgaagatgaacatgatgaattgtgcacataaattccaaag 9851346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 9872675 - 9872632
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  9872675 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 9872632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 9877790 - 9877747
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  9877790 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 9877747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 13556556 - 13556513
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  13556556 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 13556513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 35369142 - 35369099
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  35369142 ttccttgatgtgtattgcacaaccacaccaagcgtatctcctaa 35369099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 39903798 - 39903841
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  39903798 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 39903841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 39908911 - 39908954
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  39908911 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 39908954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 4553655 - 4553727
Alignment:
Q  89 ggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    ||||||| ||||||||| || |||| |||||||||||| || |||||| ||||| || ||||||||| |||||    
T  4553655 ggctgctacacttgaaatctaaaaagtttaatggttatgcacgtaaaattcaaagcgtatggggttgtcacac 4553727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 2022917 - 2022960
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||| ||||||||||||||||||    
T  2022917 ttccttgacgtgtattgcacaaccaaaccaagcgtatctcctaa 2022960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 29006743 - 29006700
Alignment:
Q  16 atgatgaagatgaatatgatgaagtgtgcacataaattccaaag 59  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||    
T  29006743 atgatcaagatgaatatgatgaagagtgcacataaatttcaaag 29006700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 25953650 - 25953464
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  ||||||||||| || || ||||||||||||||||    
T  25953650 aagaagataatgaagatgaatatgatgaagtgtgcacataaatttcaaagattgttgtatatcttaattgttgggaagagactactgcacttgaaacctg 25953551  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| ||| |||||||  |||||||||||||||  |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  25953550 aaaagtttgatggttaagcatgtaaaactcaaagtgcatggggttgccacactaacctttaagtacgattcgcccccaccaataact 25953464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 26982321 - 26982183
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  26982321 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 26982222  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26982221 ccacactaacctttaggttcgattcgcccccaccaataa 26982183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 34107988 - 34108126
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||| ||||| || |||||||||    
T  34107988 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaaatcaaagcgtatggggttg 34108087  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34108088 ccacactaacctttaggttcgattcgcccccaccaataa 34108126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 18609054 - 18608935
Alignment:
Q  75 gattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggtt 174  Q
    |||||||||||| | |||||||||||||||||||||||| ||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||||    
T  18609054 gattgttgggaagatgctgctgcacttgaaacctgaaaagtttgatggttatgcatgtaaaactcaaagcacatggggttgccacactaacctttaggtt 18608955  T
Q  175 cgattcgcccccaccaataa 194  Q
    | ||||||||||||||||||    
T  18608954 caattcgcccccaccaataa 18608935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 14315356 - 14315218
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||| | | |||||||||| | |||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  14315356 aaagattgttatatattttgtttgttgggaagaagctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 14315257  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14315256 ccacactaacctttaggttcgattcgcccccaccaataa 14315218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 14319039 - 14318922
Alignment:
Q  77 ttgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcg 176  Q
    |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  14319039 ttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacactaacctttaggttcg 14318940  T
Q  177 attcgcccccaccaataa 194  Q
    ||||||||||||||||||    
T  14318939 attcgcccccaccaataa 14318922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 26987429 - 26987296
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccaca 160  Q
    ||||| ||||||| | |||| ||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||| ||| || ||| ||||||||||    
T  26987429 ttgttatatatcttgtttgtagggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaacttaaagcgtatgtggttgccaca 26987330  T
Q  161 ctaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||||||||||||||||||||||||||    
T  26987329 ctaacctttaggttcgattcgcccccaccaataa 26987296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 43957273 - 43957156
Alignment:
Q  77 ttgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcg 176  Q
    |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||| ||||| || ||||||||| ||||||||||||||||||||    
T  43957273 ttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaattcaaagcgtatggggttgtcacactaacctttaggttcg 43957174  T
Q  177 attcgcccccaccaataa 194  Q
    ||||||||||||||||||    
T  43957173 attcgcccccaccaataa 43957156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 10341389 - 10341262
Alignment:
Q  68 atatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacct 167  Q
    |||||| |||||||||||| | ||| ||||| ||||||| |||||| || |||| |||| ||||||||||||||| |||||||| |||||| |||||||     
T  10341389 atatcttgattgttgggaagatgctactgcatttgaaacttgaaaagttcaatgattatgcatgtaaaactcaaagcgcatgggattgccatactaacc- 10341291  T
Q  168 ttaggttcgattcgcccccaccaataact 196  Q
    |||||||||||||||||||||||||||||    
T  10341290 ttaggttcgattcgcccccaccaataact 10341262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 18884829 - 18884959
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| ||||||| | |||||| || |||||||| || ||||||| ||||| |||||| ||  ||||||||||| || |||||||||||||||    
T  18884829 tgttatatatcttgattgtttgaaaaaggatgttgcacttggaatctgaaaagtttaacggttatgcacataaaactcaaaacgtatggggttgccacac 18884928  T
Q  162 taacctttaggttcgattcgcccccaccaat 192  Q
    |||| ||||||||||||||||||||||||||    
T  18884929 taacatttaggttcgattcgcccccaccaat 18884959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 14315162 - 14315119
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  14315162 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 14315119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 14318866 - 14318823
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  14318866 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 14318823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 18608879 - 18608836
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  18608879 ttccttgatgtgtattgcacaaccacaccaagcgtatctcctaa 18608836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 26982127 - 26982084
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  26982127 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 26982084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 26987240 - 26987197
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  26987240 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 26987197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 34108182 - 34108225
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  34108182 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 34108225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 43957091 - 43957057
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||||||||||||||||||||||||||||||    
T  43957091 gtgtattgcacaaccacaccaagcgtatctcctaa 43957057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 10341208 - 10341165
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||| ||||||||||||||||||||    
T  10341208 ttccttgacgtgtattgcacaactacaccaagcgtatctcctaa 10341165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 25953410 - 25953367
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||| ||||||||||||||    
T  25953410 ttccttgacgtgtattgcacaaccacacctagcgtatctcctaa 25953367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 19183897 - 19183956
Alignment:
Q  56 aaagattgttttatat--ctcgattgttgggaaaaggctgctgcacttgaaacctgaaaa 113  Q
    ||||| ||||||||||  || |||||||||||| |||||||||||||| ||| |||||||    
T  19183897 aaagagtgttttatataacttgattgttgggaagaggctgctgcacttaaaatctgaaaa 19183956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 5437021 - 5436836
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| | ||||||||||||||||| ||    
T  5437021 aagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaagattgttgtatatcttgatcgttgggaagatgctgctgcacttgaaacttg 5436922  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||||| |||||||||| ||||| ||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||    
T  5436921 aaaaatctaatggttatgcatgt-aaactcaaagcgcatggggttgccataccaacctttaggttcgatttgcccccaccaataact 5436836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 12856548 - 12856686
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  12856548 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 12856647  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12856648 ccacactaacctttaggttcgattcgcccccaccaataa 12856686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 14615189 - 14615327
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||     
T  14615189 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttt 14615288  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14615289 ccacactaacctttaggttcgattcgcccccaccaataa 14615327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 26055893 - 26056031
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||| |||||    
T  26055893 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatgaggttg 26055992  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26055993 ccacactaacctttaggttcgattcgcccccaccaataa 26056031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 26065252 - 26065390
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||| |||||    
T  26065252 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatgaggttg 26065351  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26065352 ccacactaacctttaggttcgattcgcccccaccaataa 26065390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 26050785 - 26050918
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccaca 160  Q
    ||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||||||||    
T  26050785 ttgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccaca 26050884  T
Q  161 ctaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||||||||||||||||||||||||||    
T  26050885 ctaacctttaggttcgattcgcccccaccaataa 26050918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 26060144 - 26060277
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccaca 160  Q
    ||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||||||||    
T  26060144 ttgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccaca 26060243  T
Q  161 ctaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||||||||||||||||||||||||||    
T  26060244 ctaacctttaggttcgattcgcccccaccaataa 26060277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 14610129 - 14610261
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||||    
T  14610129 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 14610228  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||    
T  14610229 taacctttaggttcgattcgcccccaccaataa 14610261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 11056390 - 11056524
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| ||| ||||||||||||||| |||||  ||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  11056390 tgttatatatcttgtttgttgggaagaggttgctgcacttgaaacatgaaatgtttaatgattatgcatgtaaaactcaaagcgcatggggttgccacac 11056489  T
Q  162 taacctttaggttcgattcgcccccaccaataact 196  Q
    ||||||||| ||  |||||||||||||||||||||    
T  11056490 taacctttatgtgtgattcgcccccaccaataact 11056524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 35352731 - 35352598
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccaca 160  Q
    ||||| |||| || ||||| |||||| ||| | ||||||||||||| || ||| |||||||||||  ||||||||||||||| ||||||||||| |||||    
T  35352731 ttgttatataacttgattgatgggaagaggttcctgcacttgaaacatggaaagtttaatggttaagcatgtaaaactcaaagcgcatggggttaccaca 35352632  T
Q  161 ctaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||||||| ||||||||||||||||||    
T  35352631 ctaacctttaggttcaattcgcccccaccaataa 35352598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 12851439 - 12851571
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| |||||||||||||||||| ||||||  ||||||| | || ||||||||||||||| || |||||||||||||||    
T  12851439 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaaactgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 12851538  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||||||||||||  | |||||||||    
T  12851539 taacctttaggttcgattcgaacacaccaataa 12851571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 4181820 - 4181686
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| |||| || ||||||| | || ||| ||||||||||||||| |||||| ||||||||||||  |||||||| ||||| || ||||||||| |||||    
T  4181820 tgttatataacttgattgttagaaagaggttgctgcacttgaaacttgaaaagtttaatggttatgtatgtaaaattcaaagcgtatggggttgtcacac 4181721  T
Q  162 taacctttaggttcgattcgcccccaccaataact 196  Q
    |||||||||||||||||||  ||||||||||||||    
T  4181720 taacctttaggttcgattcttccccaccaataact 4181686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 37460243 - 37460146
Alignment:
Q  98 acttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||||||||||||||  ||||||| |||| ||||||||||| ||| ||||  ||||| ||| |||||||| ||| ||| |||| |||||||||||||||    
T  37460243 acttgaaacctgaaatttttaatgattatgcatgtaaaacttaaagcgca-cgggttcccatactaacctatagcttcaattcacccccaccaataact 37460146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 12239475 - 12239524
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaag 59  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  12239475 aagaagatgatgatgatgaatatgatgaagtgtgcacataaatttcaaag 12239524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 12851627 - 12851670
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  12851627 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 12851670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 12856742 - 12856785
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  12856742 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 12856785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 26050974 - 26051017
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  26050974 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 26051017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 26056087 - 26056130
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  26056087 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 26056130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 26060333 - 26060376
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  26060333 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 26060376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 26065446 - 26065489
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  26065446 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 26065489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 5436772 - 5436738
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||||||||||||||||||||||||||||||    
T  5436772 gtgtattgcacaaccacaccaagcgtatctcctaa 5436738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 14610326 - 14610360
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||||||||||||||||||||||||||||||    
T  14610326 gtgtattgcacaaccacaccaagcgtatctcctaa 14610360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 12239536 - 12239569
Alignment:
Q  157 cacactaacctttaggttcgattcgcccccacca 190  Q
    |||| |||||||||||||||||||||||||||||    
T  12239536 cacattaacctttaggttcgattcgcccccacca 12239569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 23757023 - 23757068
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattcc 55  Q
    ||||| |||||||||||||| ||||||||| ||| |||||||||||    
T  23757023 aagaaaatgatgaagatgaacatgatgaagagtgaacataaattcc 23757068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 37469141 - 37469092
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaag 59  Q
    ||||| |||||||||||||| ||||| || |||||||||||||| |||||    
T  37469141 aagaagatgatgaagatgaacatgattaaatgtgcacataaatttcaaag 37469092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 21432156 - 21431971
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||  |  | ||||||||||||||||    
T  21432156 aagaagatgatgaagatgaacatgctgaagtgtgcacataaattccaaagattgttgtatatcttgattgttgggaagtgt-tactgcacttgaaacctg 21432058  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||    
T  21432057 aaaagtttaatggttatgcatgtaaaactcaaatcgcatgaggttgccacactaacttttagattcgattcacccccaccaataact 21431971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 35624730 - 35624916
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| | ||||||| |||| | ||| ||||||||||||| ||    
T  35624730 aagaagatgatgaagatgaatattacgaagtgtgcacataaattccaaagattgttgtatattttgattgttcggaagatgctactgcacttgaaacatg 35624829  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  35624830 aaaaatttaatggttatgcatgtaaaactcaaagcgcgtggggttgtcatactaacctttaggttcgattcgcccccaccaacaact 35624916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 43358464 - 43358650
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||||||||||| |||||||||| |||||||| |||||||| ||||||| ||||||| |||||||||||| | |||| |||||||||||||||    
T  43358464 aagaagatgatgaagatgactatgatgaagcgtgcacatgaattccaatgattgttgtatatcttgattgttgggaagatgctgttgcacttgaaacctg 43358563  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| ||||||| |||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  43358564 aaaagtttaatgattatgcatgtaaaactcaaagcgcatgaggttgccacactaacatttaggttcgatttgcccccaccaataact 43358650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 44524509 - 44524324
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||    
T  44524509 aagaagatgatgaagatgaacatgatgaagtatgcacataaattccaaagattgttgtatatcttgattgttgggaagatgctgctgcacttgaaacctg 44524410  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||| | |||||||||| |||| |||||||||| |||||||||||| ||||||||| |||| |||||||||||||||| ||||||||    
T  44524409 aaaagtgtaatggttatgcatgcaaaactcaaagcgcatggggttgtcacactaacattta-gttcgattcgcccccatcaataact 44524324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 10187067 - 10186883
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||| || |||| |||||||||| ||||||||||||| |||||||| || ||||||| |||| ||| ||| | |||| |||||||||||||||    
T  10187067 aagaagatgataaatatgactatgatgaagcgtgcacataaattacaaagattattgtatatcttgatttttgagaagatgctgttgcacttgaaacctg 10186968  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10186967 aaaagtttaatgattatacatgtaaaactcaaagcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataa 10186883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 29681304 - 29681488
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| | |||| |||||||||||||||    
T  29681304 aagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaagattgttgtatatcttgatcgttgggaagatgctgttgcacttgaaacctg 29681403  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    |||||| |||||||||| ||||| ||||||||| ||||||||||||||| || ||||||||||||||||| | ||||||||||||||    
T  29681404 aaaaatctaatggttatgcatgt-aaactcaaagcgcatggggttgccataccaacctttaggttcgatttg-ccccaccaataact 29681488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 48366542 - 48366359
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||| ||| |||||||| | | || |||||||||||||||    
T  48366542 aagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcgaaagattgttgtatatcttgatcgttgggaagatgttgttgcacttgaaacctg 48366443  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||| |||||||||| ||||| ||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  48366442 aaaaatctaatggttatgcatgt-aaactcaaagcgcatggggttgccataccaacctttaggttcgatttgcccccaccaataa 48366359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 16050984 - 16051105
Alignment:
Q  75 gattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggtt 174  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  16050984 gattgttgggaagatgctgctgcacttgaaacctgaaaaatttaatggttatgcatgtaaaactcagagcgcacggggttgccacactaacctttaggtt 16051083  T
Q  175 cgattcgcccccaccaataact 196  Q
    ||||||||||||||||||||||    
T  16051084 cgattcgcccccaccaataact 16051105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 28598068 - 28598206
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  28598068 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 28598167  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28598168 ccacactaacctttaggttcgattcgcccccaccaataa 28598206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 13654106 - 13654234
Alignment:
Q  68 atatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacct 167  Q
    |||||| | |||||||||| |||||||||||||||||||||||||  ||||||| |||  ||||||||| ||||| ||||||||||||||||||||||||    
T  13654106 atatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgcttacgcatgtaaaattcaaagcgcatggggttgccacactaacct 13654205  T
Q  168 ttaggttcgattcgcccccaccaataact 196  Q
    |||||||||||||||||||||||||||||    
T  13654206 ttaggttcgattcgcccccaccaataact 13654234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 28574062 - 28574194
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||| ||| || |||||||||||||||    
T  28574062 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaacttaaagcgtatggggttgccacac 28574161  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||    
T  28574162 taacctttaggttcgattcgcccccaccaataa 28574194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 1187606 - 1187727
Alignment:
Q  76 attgttgggaaaaggctgctgcacttgaaacct-gaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggtt 174  Q
    |||||||| || || |||||||||||||||||| |||||||||||| ||||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  1187606 attgttggaaatagactgctgcacttgaaacctagaaaaatttaatagttatgcatgtaaaactcaaagtgcatggggttgccacactaacctttaggtt 1187705  T
Q  175 cgattcgcccccaccaataact 196  Q
     |||||||||||||||||||||    
T  1187706 tgattcgcccccaccaataact 1187727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 19310607 - 19310724
Alignment:
Q  79 gttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgat 178  Q
    ||||| || |||||| || |||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||    
T  19310607 gttggaaagaggctgttgtacttgaaacctgaaaagtttaatggttatgcatgtgaaactcaaagcgcatggggttgcaacactaacctttaggttcgat 19310706  T
Q  179 tcgcccccaccaataact 196  Q
    || |||||||||||||||    
T  19310707 tcacccccaccaataact 19310724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 3465272 - 3465370
Alignment:
Q  96 gcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3465272 gcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacactaacctttaggttcgattcgtccccaccaataa 3465370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 17415576 - 17415492
Alignment:
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||| |||||||||||| || |||||| |||||  | ||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  17415576 aaaagtttaatggttatgcacgtaaaaatcaaagtgtatggggttgtcacactaacatttaggttcgatttgcccccaccaataa 17415492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 1187781 - 1187824
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  1187781 ttccttgatgtgtattgcacaaccacaccaagcgtatctcctaa 1187824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 3465426 - 3465469
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  3465426 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 3465469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 3468020 - 3468063
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  3468020 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 3468063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 13654288 - 13654331
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  13654288 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 13654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 28574250 - 28574293
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  28574250 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 28574293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 28598262 - 28598305
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  28598262 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 28598305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 29681552 - 29681586
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||||||||||||||||||||||||||||||    
T  29681552 gtgtattgcacaaccacaccaagcgtatctcctaa 29681586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 19310562 - 19310606
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattc 54  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||    
T  19310562 aagaagatgataaagatgtatatgatgaagtgtgcacataaattc 19310606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 49053996 - 49053964
Alignment:
Q  158 acactaacctttaggttcgattcgcccccacca 190  Q
    |||||||||||||||||||||||||||||||||    
T  49053996 acactaacctttaggttcgattcgcccccacca 49053964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 10186834 - 10186791
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||| ||||||||||||    
T  10186834 ttccttgacgtgtattgcacaaccacaccaaacgtatctcctaa 10186791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 48366293 - 48366262
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctcc 252  Q
    ||||||||||||||||||||||||||||||||    
T  48366293 gtgtattgcacaaccacaccaagcgtatctcc 48366262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 49061632 - 49061589
Alignment:
Q  16 atgatgaagatgaatatgatgaagtgtgcacataaattccaaag 59  Q
    |||| ||||||||| |||||||||||||||||||||||| ||||    
T  49061632 atgaagaagatgaacatgatgaagtgtgcacataaattctaaag 49061589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 49054052 - 49054011
Alignment:
Q  16 atgatgaagatgaatatgatgaagtgtgcacataaattccaa 57  Q
    |||| ||||||||| |||||||||||| ||||||||||||||    
T  49054052 atgaagaagatgaacatgatgaagtgtacacataaattccaa 49054011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 29827141 - 29827326
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||| || |  ||||||||||| |||||||    
T  29827141 aagaaaatgatgaagatgactatgatgaagtttgaacataaattccaaagattgttgtatatcttgattgttggaaagatactgctgcacttaaaacctg 29827240  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacact-aacctttaggttcgattcgcccccaccaataa 194  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  29827241 aaaagtttaatggttatgcatgtaaaactcaaagcgcatggggttaccacactaaacctttaggttcgattcgcctccaccaataa 29827326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 5458457 - 5458319
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  5458457 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 5458358  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5458357 ccacactaacctttaggttcgattcgcccccaccaataa 5458319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 31076847 - 31076709
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  31076847 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 31076748  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31076747 ccacactaacctttaggttcgattcgcccccaccaataa 31076709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 4049572 - 4049704
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| ||||||||||||||||||||||||| |||||||| | || ||||||||||||||| || |||||||||||||||    
T  4049572 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatatttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 4049671  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||    
T  4049672 taacctttaggttcgattcgcccccaccaataa 4049704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 4054700 - 4054838
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||| ||  ||||||| | || ||||||||||||||| || |||||||||    
T  4054700 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctggaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 4054799  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4054800 ccacactaacctttaggttcgattcgcccccaccaataa 4054838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 6853397 - 6853259
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| |||| || | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  6853397 aaagattgttatataactagtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 6853298  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6853297 ccacactaacctttaggttcgattcgcccccaccaataa 6853259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 8458074 - 8458208
Alignment:
Q  60 attgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccac 159  Q
    |||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||    
T  8458074 attgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccac 8458173  T
Q  160 actaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||    
T  8458174 actaacctttaggttcgattcgcccccaccaataa 8458208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 8464509 - 8464647
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  8464509 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 8464608  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8464609 ccacactaacctttaggttcgattcgccccaaccaataa 8464647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 10586627 - 10586489
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||| |||||    
T  10586627 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatgaggttg 10586528  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10586527 ccacactaacctttaggttcgattcgcccccaccaataa 10586489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 10591736 - 10591602
Alignment:
Q  60 attgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccac 159  Q
    |||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||    
T  10591736 attgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccac 10591637  T
Q  160 actaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||    
T  10591636 actaacctttaggttcgattcgcccccaccaataa 10591602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 10673383 - 10673245
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||| | | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  10673383 aaagattgttatatattttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 10673284  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10673283 ccacactaacctttaggttcgattcgcccccaccaataa 10673245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 33703045 - 33702907
Alignment:
Q  56 aaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttg 155  Q
    |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||    
T  33703045 aaagattgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttg 33702946  T
Q  156 ccacactaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  33702945 ccacactaacctttaggttcgattcgctcccaccaataa 33702907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 5481927 - 5481795
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||||    
T  5481927 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 5481828  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||    
T  5481827 taacctttaggttcgattcgcccccaccaataa 5481795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 6858496 - 6858362
Alignment:
Q  60 attgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccac 159  Q
    |||||| ||||||| | |||||||||| ||| |||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||    
T  6858496 attgttatatatcttgtttgttgggaagaggatgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccac 6858397  T
Q  160 actaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||    
T  6858396 actaacctttaggttcgattcgcccccaccaataa 6858362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 1302685 - 1302552
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccaca 160  Q
    ||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||||||||    
T  1302685 ttgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccaca 1302586  T
Q  161 ctaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||| |||||||||||||||    
T  1302585 ctaacctttaggttcgatacgcccccaccaataa 1302552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 10678477 - 10678360
Alignment:
Q  77 ttgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcg 176  Q
    |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  10678477 ttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacactaacctttaggttcg 10678378  T
Q  177 attcgcccccaccaataa 194  Q
    ||||||||||||||||||    
T  10678377 attcgcccccaccaataa 10678360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 31081947 - 31081814
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccaca 160  Q
    ||||| ||||||| | |||||||||| ||||||||||||||||||||| |||  ||||||| | || ||||||||||||||| || ||||||||||||||    
T  31081947 ttgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctaaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccaca 31081848  T
Q  161 ctaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||||||||||||||||||||||||||    
T  31081847 ctaacctttaggttcgattcgcccccaccaataa 31081814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 33703070 - 33703197
Alignment:
Q  67 tatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacc 166  Q
    ||||||| | ||||||| || |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||||||||||||||    
T  33703070 tatatcttgtttgttggaaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacactaacc 33703169  T
Q  167 tttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||||||||||||||||||||    
T  33703170 tttaggttcgattcgcccccaccaataa 33703197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 49784203 - 49784375
Alignment:
Q  8 cgaagaatatgatgaagatgaatatgatgaa-gtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaac 106  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||| |||  || ||| |||||||||||||||    
T  49784203 cgaagaagatgatgaacatgaatgtgatgaaagtgtgcacataaattccaaagattgttgtatatcttgatttttgacaagaggttgctgcacttgaaac 49784302  T
Q  107 ctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgccccc 186  Q
          | ||||||| |||| |||||  |||||||| |||||||||||| || |||||| ||||||||||||||||||||    
T  49784303 -----tagtttaatgattatgcatgt--aactcaaagcgcatggggttgtcaaactaacatttaggttcgattcgccccc 49784375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 20890839 - 20890959
Alignment:
Q  75 gattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggtt 174  Q
    |||||||||||| || ||||||||||| ||| || |||| |||||||||||| ||||||||||||||| || |||||||||||||||||||||||| |||    
T  20890839 gattgttgggaagagactgctgcactttaaatctaaaaagtttaatggttatgcatgtaaaactcaaagcgtatggggttgccacactaacctttaagtt 20890938  T
Q  175 cgattcgcccccaccaataact 196  Q
     |||||| | ||||||||||||    
T  20890939 tgattcg-cgccaccaataact 20890959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 4054894 - 4054937
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  4054894 ttccttaacgtgtattgcacaaccacaccaagcgtatctcctaa 4054937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 52654038 - 52653989
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaag 59  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  52654038 aagaagatgatgaaaatgaacatgatgaagtgtgcacataaattccaaag 52653989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 1302496 - 1302453
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  1302496 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 1302453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 4049760 - 4049803
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  4049760 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 4049803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 5458263 - 5458220
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  5458263 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 5458220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 5481739 - 5481696
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  5481739 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 5481696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 6853203 - 6853160
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  6853203 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 6853160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 6858306 - 6858263
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  6858306 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 6858263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 8458264 - 8458307
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  8458264 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 8458307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 8464703 - 8464746
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  8464703 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 8464746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 10673189 - 10673146
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  10673189 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 10673146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 10678304 - 10678261
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  10678304 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 10678261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 33702851 - 33702808
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  33702851 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 33702808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 33703252 - 33703295
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  33703252 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 33703295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 10591537 - 10591503
Alignment:
Q  221 gtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||||||||||||||||||||||||||||||||    
T  10591537 gtgtattgcacaaccacaccaagcgtatctcctaa 10591503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 3187858 - 3187771
Alignment:
Q  95 tgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcgattcgc 182  Q
    |||||||||||  |||||||||||||  | || || |||||| |||||  | ||||||||| || ||||||||| |||||||||||||    
T  3187858 tgcacttgaaatttgaaaaatttaataataatgcacgtaaaagtcaaagtgtatggggttgtcatactaaccttaaggttcgattcgc 3187771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 10586433 - 10586390
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | ||||||||||||||||| |||||||||||||||||    
T  10586433 ttccttgacgtgtattgcacaaccacgccaagcgtatctcctaa 10586390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 29827382 - 29827425
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | ||||||||||||||||||||||| |||||||||||    
T  29827382 ttccttgacgtgtattgcacaaccacaccaagggtatctcctaa 29827425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 31076653 - 31076610
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||| ||||||||||||    
T  31076653 ttccttgacgtgtattgcacaaccacaccaaacgtatctcctaa 31076610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 31081758 - 31081715
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||| ||||||||||||    
T  31081758 ttccttgacgtgtattgcacaaccacaccaaacgtatctcctaa 31081715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 716075 - 716229
Alignment:
Q  10 aagaatatgatgaagatgaatatgatgaagtgtgcacataaattccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctg 109  Q
    ||||| |||||||| ||||||||||||||| || ||||||||||| |||||||||| ||||||| |||||||||||| | | || |||||||||||||||    
T  716075 aagaagatgatgaa-atgaatatgatgaagcgtacacataaattctaaagattgttgtatatcttgattgttgggaagatgttgttgcacttgaaacctg 716173  T
Q  110 aaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaac 165  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  716174 aaaagtttaatggttatgcatgtaaaactcaaagcgcatggggttgccacactaac 716229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 42779938 - 42780082
Alignment:
Q  52 ttccaaagattgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggg 151  Q
    ||||||||||| || ||||||| | |||||||||| | |||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |  |||||    
T  42779938 ttccaaagattattgtatatcttgtttgttgggaagatgctgctgcacttgaaacctgaaaagtttaatgattatgcatgtaaaactcaaagcatatggg 42780037  T
Q  152 gttgccacactaacctttaggttcgattcgcccccaccaataact 196  Q
    ||| |||||||||||||||||||||||||||||||||||||||||    
T  42780038 gttaccacactaacctttaggttcgattcgcccccaccaataact 42780082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 16284215 - 16284335
Alignment:
Q  76 attgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttc 175  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||| | |||||||||    
T  16284215 attgttgggaagatgctgctgcacttgaaacctgaaaagtttaatgattatgcatgtaaaactcaaagcgcatggggttgccacactaccttttaggttc 16284314  T
Q  176 gattcgcccccaccaataact 196  Q
    |||||||||||||||||||||    
T  16284315 gattcgcccccaccaataact 16284335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 39196313 - 39196179
Alignment:
Q  60 attgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccac 159  Q
    |||||| ||||||| | |||||||||| ||| |||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||    
T  39196313 attgttatatatcttgtttgttgggaagaggatgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccac 39196214  T
Q  160 actaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||    
T  39196213 actaacctttaggttcgattcgcccccaccaataa 39196179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 17720966 - 17720833
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccaca 160  Q
    ||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||||||||    
T  17720966 ttgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccaca 17720867  T
Q  161 ctaacctttaggttcgattcgcccccaccaataa 194  Q
     |||||||||||||||||||||||||||||||||    
T  17720866 ttaacctttaggttcgattcgcccccaccaataa 17720833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 14917821 - 14917689
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||||    
T  14917821 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 14917722  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||| ||||||||||    
T  14917721 taacctttaggttcgattcgcctccaccaataa 14917689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 45120166 - 45120283
Alignment:
Q  77 ttgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacctttaggttcg 176  Q
    |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  45120166 ttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacactaacctttaggttcg 45120265  T
Q  177 attcgcccccaccaataa 194  Q
    | ||||||||||||||||    
T  45120266 actcgcccccaccaataa 45120283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 30283870 - 30283748
Alignment:
Q  60 attgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccac 159  Q
    |||||| ||||||| | |||||||||| || ||||||||||||||||||||||  |||||||           |||||||||| || ||| |||||||||    
T  30283870 attgttatatatcttgtttgttgggaagag-ctgctgcacttgaaacctgaaatgtttaatg-----------aaaactcaaagcgtatgtggttgccac 30283783  T
Q  160 actaacctttaggttcgattcgcccccaccaataa 194  Q
    ||||||||||| |||||||||||||||||||||||    
T  30283782 actaacctttaagttcgattcgcccccaccaataa 30283748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 14917633 - 14917590
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  14917633 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 14917590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 17720777 - 17720734
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  17720777 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 17720734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 30283692 - 30283649
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  30283692 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 30283649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 45120339 - 45120382
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  45120339 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 45120382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 16284390 - 16284433
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||| ||||||||||||||||||||||||||    
T  16284390 ttccttgacgtgtattgtacaaccacaccaagcgtatctcctaa 16284433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 16370 - 16504
Alignment:
Q  60 attgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccac 159  Q
    |||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||    
T  16370 attgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccac 16469  T
Q  160 actaacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||||    
T  16470 actaacctttaggttcgattcgcccccaccaataa 16504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 16276 - 16366
Alignment:
Q  61 ttgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggg 151  Q
    ||||| ||||||| | |||||||||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||    
T  16276 ttgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggg 16366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 143867 - 143995
Alignment:
Q  68 atatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacactaacct 167  Q
    |||||| | |||||||||| |||||||||||||||||||||||||  ||||||| |||  ||||||||| ||||| ||||||||||||||||||||||||    
T  143867 atatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgcttacgcatgtaaaattcaaagcgcatggggttgccacactaacct 143966  T
Q  168 ttaggttcgattcgcccccaccaataact 196  Q
    |||||||||||||||||||||||||||||    
T  143967 ttaggttcgattcgcccccaccaataact 143995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 144049 - 144092
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  144049 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 144092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 7416 - 7284
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||||||| |||||||||||||||||| ||  ||  ||||||| | || ||||||||||||||| || |||||||||||||||    
T  7416 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaatctttaatttttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 7317  T
Q  162 taacctttaggttcgattcgcccccaccaataa 194  Q
    |||||||||||||||||||||||||||||||||    
T  7316 taacctttaggttcgattcgcccccaccaataa 7284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 2270 - 2227
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtatctcctaa 255  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  2270 ttccttgacgtgtattgcacaaccacaccaagcgtatctcctaa 2227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 170583 - 170717
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| ||||||| |||  | |||||||||||||||| ||||||| |||||||||||| ||||||||||| ||| | ||||||||| ||||||    
T  170583 tgttatatatcttgattgttaggatgaagctgctgcacttgaaatctgaaaagtttaatggttatgcatgtaaaacttaaagctcatggggtttccacac 170682  T
Q  162 taacctttaggttcgattcgcccccaccaataact 196  Q
    | |||||||||||||||| |||||||| |||||||    
T  170683 tgacctttaggttcgatttgcccccactaataact 170717  T

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Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 170771 - 170807
Alignment:
Q  212 ttccttaaagtgtattgcacaaccacaccaagcgtat 248  Q
    |||||||| |||||||||| |||||||||||||||||    
T  170771 ttccttaatgtgtattgcagaaccacaccaagcgtat 170807  T

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Target: scaffold0756 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 3910 - 4011
Alignment:
Q  62 tgttttatatctcgattgttgggaaaaggctgctgcacttgaaacctgaaaaatttaatggttattcatgtaaaactcaaatcgcatggggttgccacac 161  Q
    |||| ||||||| | |||||| ||| |||||||||||||||||||||||||  ||||||| | || ||||||||||||||| || |||||||||||||||    
T  3910 tgttatatatcttgtttgttgagaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 4009  T
Q  162 ta 163  Q
    ||    
T  4010 ta 4011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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