View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18336_low_39 (Length: 242)
Name: NF18336_low_39
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18336_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 28168675 - 28168889
Alignment:
| Q |
18 |
catccatcatgtctcctatcttgtcgacaaccactcttatcttctcgtgtatatcctcatctcagtagaagccatacacttatgaagagttgttttattc |
117 |
Q |
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| T |
28168675 |
catccatcatgtctcctatcttgtcgacaaccactcttatcttctcgtgtatatcctcatctcagtagaagccatacatttatgaagagttgttttattc |
28168774 |
T |
|
| Q |
118 |
tctttctttattaattctttcaatatcgtttgatgattcctaatgtttcccaaaatatacgagttcaattctcttgtatatctttccaatttcatcaacg |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28168775 |
tctttctttattaactctttcaatatcgtttgatgattcctaatgtttcccaaaatatacgagttcaattctcttgtatatcttttcaatttcatcaacg |
28168874 |
T |
|
| Q |
218 |
tttcatgcacctttg |
232 |
Q |
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||||||||||||||| |
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| T |
28168875 |
tttcatgcacctttg |
28168889 |
T |
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