View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_low_42 (Length: 235)

Name: NF18336_low_42
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_low_42
NF18336_low_42
[»] chr4 (21 HSPs)
chr4 (1-235)||(53865248-53865483)
chr4 (1-44)||(2124339-2124383)
chr4 (1-44)||(36309622-36309666)
chr4 (1-36)||(9967685-9967720)
chr4 (1-43)||(33819687-33819730)
chr4 (1-45)||(21995664-21995709)
chr4 (1-45)||(41025055-41025100)
chr4 (1-36)||(1492675-1492711)
chr4 (1-36)||(6841824-6841860)
chr4 (1-36)||(8157294-8157330)
chr4 (1-36)||(8165765-8165801)
chr4 (1-48)||(10473653-10473701)
chr4 (1-36)||(17109923-17109959)
chr4 (1-36)||(25715646-25715682)
chr4 (1-36)||(25715732-25715768)
chr4 (1-36)||(31763113-31763149)
chr4 (1-36)||(36309419-36309455)
chr4 (1-36)||(36924244-36924280)
chr4 (1-44)||(37059706-37059750)
chr4 (1-36)||(54895407-54895443)
chr4 (1-36)||(54895588-54895624)
[»] chr8 (7 HSPs)
chr8 (1-43)||(32644043-32644085)
chr8 (1-43)||(18757333-18757376)
chr8 (1-36)||(1672936-1672972)
chr8 (1-36)||(15808888-15808924)
chr8 (1-36)||(17792897-17792933)
chr8 (1-36)||(27506709-27506745)
chr8 (1-36)||(35448615-35448651)
[»] chr5 (9 HSPs)
chr5 (1-43)||(7286959-7287001)
chr5 (1-49)||(3340580-3340629)
chr5 (1-45)||(39086511-39086556)
chr5 (1-45)||(11376586-11376630)
chr5 (1-36)||(11660987-11661023)
chr5 (1-36)||(23155528-23155564)
chr5 (1-44)||(35662238-35662282)
chr5 (1-36)||(39166345-39166381)
chr5 (1-36)||(39861785-39861821)
[»] chr3 (8 HSPs)
chr3 (1-49)||(50416569-50416618)
chr3 (4-45)||(12974006-12974048)
chr3 (1-45)||(36185910-36185955)
chr3 (1-36)||(8036803-8036839)
chr3 (1-44)||(36185721-36185765)
chr3 (1-48)||(47225853-47225901)
chr3 (1-36)||(47924371-47924407)
chr3 (1-36)||(50416483-50416519)
[»] chr1 (12 HSPs)
chr1 (1-44)||(42134138-42134182)
chr1 (1-44)||(45849103-45849147)
chr1 (1-42)||(9628604-9628646)
chr1 (1-36)||(9041056-9041092)
chr1 (1-36)||(10974636-10974672)
chr1 (1-36)||(14229175-14229211)
chr1 (5-48)||(17811292-17811336)
chr1 (1-36)||(17893075-17893111)
chr1 (1-36)||(17893278-17893314)
chr1 (1-44)||(18928960-18929004)
chr1 (1-44)||(29945421-29945465)
chr1 (1-36)||(33156995-33157031)
[»] chr6 (8 HSPs)
chr6 (6-45)||(26713184-26713223)
chr6 (1-46)||(10588958-10589004)
chr6 (1-45)||(10698571-10698616)
chr6 (1-44)||(19281278-19281322)
chr6 (1-36)||(19284374-19284410)
chr6 (1-36)||(21384994-21385030)
chr6 (1-36)||(22857491-22857527)
chr6 (1-36)||(22857682-22857718)
[»] chr2 (11 HSPs)
chr2 (1-36)||(31711704-31711739)
chr2 (1-45)||(31783787-31783832)
chr2 (1-44)||(16111710-16111754)
chr2 (1-36)||(19246665-19246701)
chr2 (1-36)||(20661399-20661435)
chr2 (1-36)||(24183602-24183638)
chr2 (1-44)||(30777290-30777334)
chr2 (1-36)||(34726607-34726643)
chr2 (1-44)||(37867360-37867404)
chr2 (1-36)||(42364495-42364531)
chr2 (1-44)||(42364698-42364742)
[»] scaffold0516 (1 HSPs)
scaffold0516 (1-36)||(1253-1289)
[»] scaffold0249 (2 HSPs)
scaffold0249 (1-36)||(23547-23583)
scaffold0249 (1-36)||(23740-23776)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-36)||(20125-20161)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-36)||(33619-33655)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-36)||(51908-51944)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-36)||(96002-96038)
[»] chr7 (5 HSPs)
chr7 (1-36)||(26945719-26945755)
chr7 (1-44)||(34227671-34227715)
chr7 (1-36)||(44426601-44426637)
chr7 (1-44)||(44426804-44426848)
chr7 (1-36)||(46004540-46004576)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 53865248 - 53865483
Alignment:
Q  1 tatgcagggtgcataaggatttc-ttatgcaccataagcgcgcccaaaatgcactacgctagggtaatttcttggtaactagtaatttcgcttgaacgca 99  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53865248 tatgcagggtgcataaggatttccttatgcaccataaccgcgcccaaaatgcactacgctagggtaatttcttggtaactagtaatttcgctcgaacgca 53865347  T
Q  100 atcactttttcttatttgaattttagatttctgcttgcacttgttttatccatggcaacagccctttctgcaattcgtattgttgtcgccggcgacaagg 199  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53865348 atcactttttcttatttgaattttagatttctgcttgcgcttgctttatccatggcaacagacctttctgcaattcgtattgttgtcgccggcgacaagg 53865447  T
Q  200 aaccggcaagtctagtctaatcactacttttgccac 235  Q
    ||||||||||||||||||||||||||||||||||||    
T  53865448 aaccggcaagtctagtctaatcactacttttgccac 53865483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2124383 - 2124339
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  2124383 tatgcagggtgcataaggatttccttatgcaccataaccgcgccc 2124339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36309622 - 36309666
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataagcgcgccc 44  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||    
T  36309622 tatgcagggtgcataaggattttcttatgcaccataaccgcgccc 36309666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9967720 - 9967685
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataa 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  9967720 tatgcagggtgcataaggattccttatgcaccataa 9967685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33819730 - 33819687
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcc 43  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  33819730 tatgcagggtgcataaggatttccttatgcaccataaccgcgcc 33819687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21995709 - 21995664
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 45  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  21995709 tatgcagggtgcataaggatttccttatgcaccataaccgcaccca 21995664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41025100 - 41025055
Alignment:
Q  1 tatgcagggtgcataaggatttc-ttatgcaccataagcgcgccca 45  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  41025100 tatgcagggtgcataaggatttcattatgtaccataaccgcgccca 41025055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1492711 - 1492675
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1492711 tatgcagggtgcataaggatttccttatgcaccataa 1492675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6841860 - 6841824
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6841860 tatgcagggtgcataaggatttccttatgcaccataa 6841824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8157294 - 8157330
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8157294 tatgcagggtgcataaggatttccttatgcaccataa 8157330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8165801 - 8165765
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8165801 tatgcagggtgcataaggatttccttatgcaccataa 8165765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10473653 - 10473701
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaa 48  Q
    |||||| ||||||||||||||| |||||||||||||| ||| |||||||    
T  10473653 tatgcacggtgcataaggatttccttatgcaccataaccgctcccaaaa 10473701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17109923 - 17109959
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17109923 tatgcagggtgcataaggatttccttatgcaccataa 17109959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 25715682 - 25715646
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  25715682 tatgcagggtgcataaggatttccttatgcaccataa 25715646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25715732 - 25715768
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  25715732 tatgcagggtgcataaggattttcttatgcaccataa 25715768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31763113 - 31763149
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31763113 tatgcagggtgcataaggatttccttatgcaccataa 31763149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36309455 - 36309419
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  36309455 tatgcagggtgcataaggatttccttatgcaccataa 36309419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36924280 - 36924244
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  36924280 tatgcagggtgcataaggatttccttatgcaccataa 36924244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37059750 - 37059706
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||| ||||||||||||||| |||||||||||||| |||||||    
T  37059750 tatgcaaggtgcataaggatttccttatgcaccataaccgcgccc 37059706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 54895443 - 54895407
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  54895443 tatgcagggtgcataaggattttcttatgcaccataa 54895407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 54895588 - 54895624
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  54895588 tatgcagggtgcataaggatttccttatgcaccataa 54895624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32644085 - 32644043
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataagcgcgcc 43  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  32644085 tatgcagggtgcataaggattccttatgcaccataaccgcgcc 32644043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18757333 - 18757376
Alignment:
Q  1 tatgcagggtgcataaggatttc-ttatgcaccataagcgcgcc 43  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||    
T  18757333 tatgcagggtgcataaggatttctttatgcaccataaccgcgcc 18757376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1672936 - 1672972
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1672936 tatgcagggtgcataaggatttccttatgcaccataa 1672972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15808924 - 15808888
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  15808924 tatgcagggtgcataaggattttcttatgcaccataa 15808888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17792897 - 17792933
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17792897 tatgcagggtgcataaggatttccttatgcaccataa 17792933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27506745 - 27506709
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  27506745 tatgcagggtgcataaggatttccttatgcaccataa 27506709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35448615 - 35448651
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  35448615 tatgcagggtgcataaggatttccttatgcaccataa 35448651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7286959 - 7287001
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataagcgcgcc 43  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  7286959 tatgcagggtgcataaggattccttatgcaccataaccgcgcc 7287001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3340629 - 3340580
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaat 49  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  3340629 tatgcagggtgcataaggatttccttatgcaccataaccgcacccaaaat 3340580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39086556 - 39086511
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataagcgcgccca 45  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  39086556 tatgcagggtgcataaggattttcttatgcaccataaccgcaccca 39086511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11376586 - 11376630
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataagcgcgccca 45  Q
    ||||||| ||||||||||||| ||||||||||||||  |||||||    
T  11376586 tatgcagtgtgcataaggattccttatgcaccataactgcgccca 11376630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11660987 - 11661023
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  11660987 tatgcagggtgcataaggatttccttatgcaccataa 11661023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23155564 - 23155528
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23155564 tatgcagggtgcataaggatttccttatgcaccataa 23155528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35662238 - 35662282
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||    
T  35662238 tatgcagggtgcataagtatttccttatgcaccataaccgcgccc 35662282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39166345 - 39166381
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39166345 tatgcagggtgcataaggattttcttatgcaccataa 39166381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39861785 - 39861821
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  39861785 tatgcagggtgcataaggatttccttatgcaccataa 39861821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50416569 - 50416618
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaat 49  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  50416569 tatgcagggtgcataaggatttccttatgcaccataaccgcacccaaaat 50416618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 12974048 - 12974006
Alignment:
Q  4 gcagggtgcataaggattt-cttatgcaccataagcgcgccca 45  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  12974048 gcagggtgcataaggatttccttatgcaccataaccgcgccca 12974006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36185910 - 36185955
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 45  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  36185910 tatgcagggtgcataaggatttccttatgcaccataaccgcaccca 36185955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8036839 - 8036803
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8036839 tatgcagggtgcataaggatttccttatgcaccataa 8036803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36185765 - 36185721
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||    
T  36185765 tatgcaggatgcataaggatttccttatgcaccataaccgcgccc 36185721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47225853 - 47225901
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaa 48  Q
    |||||||||| ||||||||||| ||||||||||||||  ||||||||||    
T  47225853 tatgcagggtacataaggatttccttatgcaccataactgcgcccaaaa 47225901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47924371 - 47924407
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  47924371 tatgcagggtgcataaggatttccttatgcaccataa 47924407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 50416519 - 50416483
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  50416519 tatgcagggtgcataaggatttccttatgcaccataa 50416483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42134138 - 42134182
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  42134138 tatgcagggtgcataaggatttccttatgcaccataaccgcgccc 42134182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45849147 - 45849103
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  45849147 tatgcagggtgcataaggatttccttatgcaccataatcgcgccc 45849103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9628604 - 9628646
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgc 42  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  9628604 tatgcagggtgcataaggatttccttatgcaccataaccgcgc 9628646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9041056 - 9041092
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9041056 tatgcagggtgcataaggatttccttatgcaccataa 9041092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10974672 - 10974636
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  10974672 tatgcagggtgcataaggatttccttatgcaccataa 10974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14229211 - 14229175
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  14229211 tatgcagggtgcataaggatttccttatgcaccataa 14229175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 17811292 - 17811336
Alignment:
Q  5 cagggtgcataaggattt-cttatgcaccataagcgcgcccaaaa 48  Q
    |||||||||||||||||| |||||||||||||| |||||| ||||    
T  17811292 cagggtgcataaggatttccttatgcaccataaccgcgccaaaaa 17811336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17893111 - 17893075
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17893111 tatgcagggtgcataaggatttccttatgcaccataa 17893075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17893278 - 17893314
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17893278 tatgcagggtgcataaggatttccttatgcaccataa 17893314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18928960 - 18929004
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||    
T  18928960 tatgcagggtgcataaagatttccttatgcaccataaccgcgccc 18929004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29945421 - 29945465
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||    
T  29945421 tatgcagagtgcataaggatttccttatgcaccataaccgcgccc 29945465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33157031 - 33156995
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  33157031 tatgcagggtgcataaggatttccttatgcaccataa 33156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 26713184 - 26713223
Alignment:
Q  6 agggtgcataaggatttcttatgcaccataagcgcgccca 45  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  26713184 agggtgcataaggatttcttatgcaccataaccgcaccca 26713223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10588958 - 10589004
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaa 46  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||    
T  10588958 tatgcagggtgcataaggatttccttatgcaccataaccgcacccaa 10589004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10698616 - 10698571
Alignment:
Q  1 tatgcagggtgcataaggatttc-ttatgcaccataagcgcgccca 45  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  10698616 tatgcagggtgcacaaggatttccttatgcaccataaccgcgccca 10698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19281322 - 19281278
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||    
T  19281322 tatgcagggtgcacaaggatttccttatgcaccataaccgcgccc 19281278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19284410 - 19284374
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  19284410 tatgcagggtgcataaggatttccttatgcaccataa 19284374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21384994 - 21385030
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  21384994 tatgcagggtgcataaggatttccttatgcaccataa 21385030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22857527 - 22857491
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22857527 tatgcagggtgcataaggatttccttatgcaccataa 22857491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22857682 - 22857718
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22857682 tatgcagggtgcataaggattttcttatgcaccataa 22857718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31711704 - 31711739
Alignment:
Q  1 tatgcagggtgcataaggatttcttatgcaccataa 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  31711704 tatgcagggtgcatgaggatttcttatgcaccataa 31711739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31783832 - 31783787
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 45  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  31783832 tatgcagggtgcataaggatttccttatgcaccataaccgcaccca 31783787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16111710 - 16111754
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||    
T  16111710 tatgcagggtgcataaagatttccttatgcaccataaccgcgccc 16111754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19246701 - 19246665
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  19246701 tatgcagggtgcataaggatttccttatgcaccataa 19246665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 20661435 - 20661399
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  20661435 tatgcagggtgcataaggatttccttatgcaccataa 20661399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 24183602 - 24183638
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  24183602 tatgcagggtgcataaggatttccttatgcaccataa 24183638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30777334 - 30777290
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataagcgcgccc 44  Q
    ||||||||||||||||||| ||| ||||||||||||| |||||||    
T  30777334 tatgcagggtgcataaggatttttttatgcaccataaccgcgccc 30777290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34726643 - 34726607
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34726643 tatgcagggtgcataaggatttccttatgcaccataa 34726607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37867360 - 37867404
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||    
T  37867360 tatgcagggtgcataaggatttccttatgcaccgtaaccgcgccc 37867404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42364531 - 42364495
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42364531 tatgcagggtgcataaggattttcttatgcaccataa 42364495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42364698 - 42364742
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||    
T  42364698 tatgcagggtgcataaggatttccttttgcaccataaccgcgccc 42364742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1253 - 1289
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1253 tatgcagggtgcataaggatttccttatgcaccataa 1289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23583 - 23547
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23583 tatgcagggtgcataaggatttccttatgcaccataa 23547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23740 - 23776
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23740 tatgcagggtgcataaggatttccttatgcaccataa 23776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20125 - 20161
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  20125 tatgcagggtgcataaggatttccttatgcaccataa 20161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33655 - 33619
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  33655 tatgcagggtgcataaggatttccttatgcaccataa 33619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 51944 - 51908
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  51944 tatgcagggtgcataaggatttccttatgcaccataa 51908  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 96038 - 96002
Alignment:
Q  1 tatgcagggtgcataagga-tttcttatgcaccataa 36  Q
    ||||||||||||||||||| |||||||||||||||||    
T  96038 tatgcagggtgcataaggattttcttatgcaccataa 96002  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26945719 - 26945755
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26945719 tatgcagggtgcataaggatttccttatgcaccataa 26945755  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34227715 - 34227671
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||    
T  34227715 tatgcaggttgcataaggatttccttatgcaccataaccgcgccc 34227671  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44426637 - 44426601
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  44426637 tatgcagggtgcataaggatttccttatgcaccataa 44426601  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44426804 - 44426848
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 44  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||    
T  44426804 tatgcagggtgcataaagatttccttatgcaccataaccgcgccc 44426848  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 46004540 - 46004576
Alignment:
Q  1 tatgcagggtgcataaggattt-cttatgcaccataa 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  46004540 tatgcagggtgcataaggatttccttatgcaccataa 46004576  T

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