View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_low_45 (Length: 204)

Name: NF18336_low_45
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_low_45
NF18336_low_45
[»] chr7 (5 HSPs)
chr7 (13-187)||(5309703-5309877)
chr7 (13-187)||(5314520-5314694)
chr7 (13-187)||(5283878-5284052)
chr7 (13-187)||(5290075-5290249)
chr7 (13-187)||(5302066-5302240)
[»] chr5 (6 HSPs)
chr5 (22-187)||(1504369-1504534)
chr5 (20-187)||(1491605-1491772)
chr5 (21-187)||(1481715-1481881)
chr5 (18-187)||(1477604-1477773)
chr5 (18-169)||(1485469-1485622)
chr5 (21-179)||(1496823-1496981)
[»] chr1 (3 HSPs)
chr1 (19-187)||(44128183-44128351)
chr1 (19-187)||(44132388-44132556)
chr1 (19-187)||(44140810-44140978)
[»] chr2 (1 HSPs)
chr2 (19-187)||(24165436-24165604)
[»] chr3 (3 HSPs)
chr3 (23-136)||(37863716-37863829)
chr3 (23-79)||(37859726-37859782)
chr3 (23-79)||(39029635-39029691)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 6e-73; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5309877 - 5309703
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||    
T  5309877 gagaagaatacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttc 5309778  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  5309777 aacacaatttgctggatttgcagtaccaatggccaaaatagttgcaggaccttctgctctttgagcattacgaat 5309703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5314694 - 5314520
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| |||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||| |||||||||||||| || ||||| |||||||||||    
T  5314694 gagaagaatacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttc 5314595  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5314594 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 5314520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5284052 - 5283878
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  5284052 gagaagaatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttc 5283953  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  5283952 aacacaatttgctggatttgcagtcccaatggccaagatggttgcagggccttctgccctttgagctttacgaat 5283878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 5290075 - 5290249
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5290075 gagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttc 5290174  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||||||| ||||||||    
T  5290175 aacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaat 5290249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5302240 - 5302066
Alignment:
Q  13 gagatgaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttc 112  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5302240 gagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttc 5302141  T
Q  113 aacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||||||| ||||||||    
T  5302140 aacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaat 5302066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 1504534 - 1504369
Alignment:
Q  22 acttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaatt 121  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| || || ||||| ||||||||||||||||||||    
T  1504534 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 1504435  T
Q  122 tgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  1504434 tggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgctctctgagccttgcgaat 1504369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 1491772 - 1491605
Alignment:
Q  20 atacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaa 119  Q
    ||||||||||||||| |||||||| ||||| || |||||||||||||| || |||||||||||||||||||| || ||||| |||||||||||||||||     
T  1491772 atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag 1491673  T
Q  120 tttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  1491672 tttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaat 1491605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 1481881 - 1481715
Alignment:
Q  21 tacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaat 120  Q
    |||||||||||||| |||||||| ||||| |||||   ||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||| |    
T  1481881 tacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacagt 1481782  T
Q  121 ttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  1481781 ttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaat 1481715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 1477773 - 1477604
Alignment:
Q  18 gaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacac 117  Q
    ||||||||||||||||| |||||||| ||||| ||||||  |||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||||||    
T  1477773 gaatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacac 1477674  T
Q  118 aatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    | || |||||||||||||| ||||||||||  ||||| ||||| |||||||| || |||||||| |||||    
T  1477673 agttggctggatttgcagtgccaatggccatgatggtggcagggccttctgccctctgagccttgcgaat 1477604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 1485622 - 1485469
Alignment:
Q  18 gaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaa--agtccggataagtgctttgttcaac 115  Q
    ||||||||||| |||||||||||||||||| | ||||  || ||||| || || |||| |||| | ||||| |  | || ||||| ||||||||||||||    
T  1485622 gaatacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttcaac 1485523  T
Q  116 acaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgc 169  Q
    |||||||| |||||||||||| || |||||||| ||| ||||||| ||||||||    
T  1485522 acaatttggtggatttgcagttcctatggccaagatgattgcagggccttctgc 1485469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 1496981 - 1496823
Alignment:
Q  21 tacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaat 120  Q
    |||| ||| |||||||| ||||||| ||||| |||||| ||||| ||| ||||||||| | | || || |  || ||||| ||||||||||||| |||||    
T  1496981 tactaacatatgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaat 1496882  T
Q  121 ttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagcc 179  Q
    ||| |||||||||||| ||||| || || || |||| ||| |||||||| |||||||||    
T  1496881 ttgttggatttgcagtgccaatagctaagatagttgtagggccttctgccctttgagcc 1496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 44128351 - 44128183
Alignment:
Q  19 aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca 118  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||||||||    
T  44128351 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca 44128252  T
Q  119 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || |||||    
T  44128251 attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaat 44128183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 44132556 - 44132388
Alignment:
Q  19 aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca 118  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||||||||    
T  44132556 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca 44132457  T
Q  119 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || |||||    
T  44132456 attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaat 44132388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 44140978 - 44140810
Alignment:
Q  19 aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca 118  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||||||||    
T  44140978 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca 44140879  T
Q  119 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
    ||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || |||||    
T  44140878 attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaat 44140810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 24165436 - 24165604
Alignment:
Q  19 aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca 118  Q
    |||||||||| ||||| |||||||| ||||| ||||   | ||||| || |||||||||| | ||||||| || || ||||| |||||||||||||||||    
T  24165436 aatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacaca 24165535  T
Q  119 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaat 187  Q
     |||| |||||||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||    
T  24165536 gtttggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttgagccttacgaat 24165604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 37863716 - 37863829
Alignment:
Q  23 cttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaattt 122  Q
    ||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||    ||||||||||| ||||| || || || |||||||| |||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacacagttt 37863815  T
Q  123 gctggatttgcagt 136  Q
       |||||||||||    
T  37863816 tgaggatttgcagt 37863829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
Q  23 cttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgat 79  Q
    ||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||    
T  37859726 cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat 37859782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 39029691 - 39029635
Alignment:
Q  23 cttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgat 79  Q
    ||||||||||||||||||||| ||||| || || || ||||| ||||| ||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat 39029635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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