View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_low_5 (Length: 691)

Name: NF18336_low_5
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_low_5
NF18336_low_5
[»] chr5 (5 HSPs)
chr5 (411-589)||(40574650-40574828)
chr5 (179-371)||(40575006-40575193)
chr5 (112-179)||(40575228-40575295)
chr5 (15-83)||(40575328-40575395)
chr5 (622-666)||(40574604-40574648)
[»] chr7 (3 HSPs)
chr7 (500-669)||(43835200-43835369)
chr7 (205-482)||(43834855-43835139)
chr7 (15-86)||(43834398-43834469)
[»] chr1 (4 HSPs)
chr1 (514-668)||(18143261-18143415)
chr1 (514-668)||(18222249-18222403)
chr1 (318-398)||(18222447-18222527)
chr1 (317-398)||(18143136-18143217)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 411 - 589
Target Start/End: Complemental strand, 40574828 - 40574650
Alignment:
Q  411 gttcgctcctcaacacctttcttactatttatatagaagctggttagaatgtgcacaaaagcaaatatttctgaatggcagtaacaataagaagcaaact 510  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  40574828 gttcgcttctcaacacccttcttactatttataaagaagctggttagaatgtgcacagaagcaaatatttctgaatagcactaacaataagaagcaaact 40574729  T
Q  511 cacatttccaacacatctgatgcatggagttttgacaaaaaatgggccactgctgattccagaaaagacaaatgttttg 589  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||  |||||| | |||||||||||||||||||||||    
T  40574728 cacatttccaacacatctgatgcaaggagtttggacacaaaatggatcactgccgcttccagaaaagacaaatgttttg 40574650  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 179 - 371
Target Start/End: Complemental strand, 40575193 - 40575006
Alignment:
Q  179 gagtatcatgtaacttttcaaagccgtaaactatatattttggtttcagtagagatctatcaggtgcttgctttataatgatatgtgtttggaagtctag 278  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||  ||||| |||||||    ||| |||||| ||||| | |||| ||| | || ||    
T  40575193 gagtatcatttaacttttcaaagccataaattatatattttggttttggtagaaatctatc----gct-gctttaaaatgacaagtgtctggcattccag 40575099  T
Q  279 tataataattaaaatagagaataaatttcataaactaccttgaaaaacttcattctttgcacatttttcacgtaacacctcaacaaatgtgca 371  Q
    || |||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  40575098 tacaataattaaaatagagaaaaaattgcataaactaccttgaaagacttcattatttgcacatttttcacgtaagacctcaacaaatgtgca 40575006  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 40575295 - 40575228
Alignment:
Q  112 caaccatatgaactcgttcattattttccacagttaaaaaggaaaattgtacatcaaactatgtattg 179  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  40575295 caaccatatgaactcattcattatttgccacagttaaaaaggaaaatgatacatcaaacaatgtattg 40575228  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 40575395 - 40575328
Alignment:
Q  15 cagagaagttcaacatggaaaatatggagaattacaactgcagaaagctcttgaaatatgaggctcatt 83  Q
    |||||| ||||||||||||||  || ||||||||||||||||||||||||||||| |||||||||||||    
T  40575395 cagagaggttcaacatggaaac-atagagaattacaactgcagaaagctcttgaactatgaggctcatt 40575328  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 666
Target Start/End: Complemental strand, 40574648 - 40574604
Alignment:
Q  622 ttgacaagttttaaaatgtctgacttatgattgttccgggcagca 666  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||    
T  40574648 ttgacaagttttaaaatgtttgacttatgcttgttcccggcagca 40574604  T

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Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 500 - 669
Target Start/End: Original strand, 43835200 - 43835369
Alignment:
Q  500 agaagcaaactcacatttccaacacatctgatgcatggagttttgacaaaaaatgggccactgctgattccagaaaagacaaatgttttggagcatctac 599  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  |||| |||| ||||||||||||||| |||||||||||||||||    
T  43835200 agaagcaaactcacatttccaacacatctgatgcagggagttttgacacaaaatgaaccacagctgcttccagaaaagacaattgttttggagcatctac 43835299  T
Q  600 aaaagcatattcaataccatccttgacaagttttaaaatgtctgacttatgattgttccgggcagcacca 669  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||    
T  43835300 aaaagcatattcaataccatccttgacaagttttaaaatgtcagacttgtacttgttccgggcagcacca 43835369  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 205 - 482
Target Start/End: Original strand, 43834855 - 43835139
Alignment:
Q  205 taaactatatattttggtttcagtagagatctatcaggtgcttgctttataatgatatgtgtttggaagtctagtataataattaaaatagagaataaat 304  Q
    ||||||||||||||||||||||||||||| ||| |||||  ||| |||||||||||| | |||||   ||| ||| | |||||||| |||||||| || |    
T  43834855 taaactatatattttggtttcagtagagacctaacaggttgttggtttataatgataagagtttgccggtc-agtgtgataattaatatagagaagaa-t 43834952  T
Q  305 ttcataaactaccttgaaaaacttcattctttgcacatttttcacgtaacacctcaacaaatgtgcaatagggacaccagactctgggattttc------ 398  Q
    | |||||| |||||||||| |||||||||||  |||||||||| || || ||||||||||||||||||||||||| |||| | |||||||||||          
T  43834953 tgcataaaataccttgaaagacttcattcttcacacatttttcccgcaagacctcaacaaatgtgcaatagggacgccagccactgggattttcatcttt 43835052  T
Q  399 -gttacattttccgttcgctcctcaacacctttcttac--tatttatatagaagctggttagaatgtgcacaaaagcaaatatttct 482  Q
      |||||||||| |||||||  |||||| | |||||||  | |||||| ||||| |||||| |||||||||| ||||||||||||||    
T  43835053 atttacattttctgttcgcttttcaacatccttcttactgtttttataaagaagttggttaaaatgtgcacagaagcaaatatttct 43835139  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 43834398 - 43834469
Alignment:
Q  15 cagagaagttcaacatggaaaatatggagaattacaactgcagaaagctcttgaaatatgaggctcattcag 86  Q
    |||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  43834398 cagagacgttcaacatggaaaacatagagaattgcaactgcagaaagctcttgaaatatgaggttcattcag 43834469  T

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Target: chr1 (Bit Score: 103; Significance: 7e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 514 - 668
Target Start/End: Original strand, 18143261 - 18143415
Alignment:
Q  514 atttccaacacatctgatgcatggagttttgacaaaaaatgggccactgctgattccagaaaagacaaatgttttggagcatctacaaaagcatattcaa 613  Q
    ||||||||||||||||||||| |||||||||||| |||||||  |||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  18143261 atttccaacacatctgatgcagggagttttgacacaaaatggatcactgccgcttctagaaaagacaaatgttttggagcatcttcaaaagcatattcaa 18143360  T
Q  614 taccatccttgacaagttttaaaatgtctgacttatgattgttccgggcagcacc 668  Q
    ||||| | |||||||||||||||||||||||||| |  |||||||||||||||||    
T  18143361 taccaccgttgacaagttttaaaatgtctgacttgtacttgttccgggcagcacc 18143415  T

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Target: chr1; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 514 - 668
Target Start/End: Complemental strand, 18222403 - 18222249
Alignment:
Q  514 atttccaacacatctgatgcatggagttttgacaaaaaatgggccactgctgattccagaaaagacaaatgttttggagcatctacaaaagcatattcaa 613  Q
    ||||||||||||||||||||| ||||||||| |  ||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||    
T  18222403 atttccaacacatctgatgcagggagttttgccgcaaaatggaccactgccgcttccagaaaagacaaatgttttggagcatcttcaaaagcatattcaa 18222304  T
Q  614 taccatccttgacaagttttaaaatgtctgacttatgattgttccgggcagcacc 668  Q
    ||||||||||||||||||||||||| |||||||| |  |||||||||||| ||||    
T  18222303 taccatccttgacaagttttaaaatttctgacttgtacttgttccgggcaccacc 18222249  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 398
Target Start/End: Complemental strand, 18222527 - 18222447
Alignment:
Q  318 ttgaaaaacttcattctttgcacatttttcacgtaacacctcaacaaatgtgcaatagggacaccagactctgggattttc 398  Q
    |||||| ||||||||||| || | ||||||  | || ||||||||||||||||||||||||| |||| |  ||||||||||    
T  18222527 ttgaaagacttcattcttcgcgcctttttcctgcaagacctcaacaaatgtgcaatagggacgccagccattgggattttc 18222447  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 18143136 - 18143217
Alignment:
Q  317 cttgaaaaacttcattctttgcacatttttcacgtaacacctcaacaaatgtgcaatagggacaccagactctgggattttc 398  Q
    ||||||| ||||||||||| || | ||||||  | || ||||||||||||||| ||||||||| |||| | || ||||||||    
T  18143136 cttgaaagacttcattcttcgcgcctttttcctgcaagacctcaacaaatgtgtaatagggacgccagccacttggattttc 18143217  T

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