View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_low_6 (Length: 617)

Name: NF18336_low_6
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_low_6
NF18336_low_6
[»] chr4 (4 HSPs)
chr4 (13-316)||(51861985-51862283)
chr4 (13-216)||(39482302-39482500)
chr4 (336-569)||(51861698-51861945)
chr4 (214-265)||(7807638-7807689)
[»] chr3 (5 HSPs)
chr3 (75-316)||(22157786-22158028)
chr3 (333-569)||(22158065-22158317)
chr3 (13-111)||(22157697-22157790)
chr3 (232-301)||(9765713-9765782)
chr3 (13-214)||(9765844-9766039)
[»] chr7 (4 HSPs)
chr7 (87-316)||(9332858-9333087)
chr7 (333-569)||(9333124-9333377)
chr7 (13-111)||(9332757-9332849)
chr7 (214-253)||(27273125-27273164)
[»] chr8 (4 HSPs)
chr8 (214-311)||(43651710-43651807)
chr8 (23-79)||(22647851-22647907)
chr8 (87-152)||(22647938-22648003)
chr8 (96-214)||(43651549-43651666)
[»] chr5 (4 HSPs)
chr5 (214-311)||(21114919-21115016)
chr5 (13-214)||(21114680-21114875)
chr5 (87-152)||(27030052-27030117)
chr5 (23-79)||(27030148-27030204)
[»] scaffold0039 (1 HSPs)
scaffold0039 (217-295)||(81348-81426)
[»] chr6 (2 HSPs)
chr6 (13-79)||(13550183-13550249)
chr6 (214-253)||(13550382-13550421)
[»] scaffold0755 (2 HSPs)
scaffold0755 (87-152)||(5435-5500)
scaffold0755 (23-79)||(5531-5584)
[»] chr2 (2 HSPs)
chr2 (232-306)||(24863748-24863824)
chr2 (46-74)||(24863506-24863534)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 51862283 - 51861985
Alignment:
Q  13 aaaatgaccaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaac 112  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||     |||||||||||||||||||||||||||     
T  51862283 aaaatcaccaactaaatcatccattcatactgaaattgaaattaaaaataagaaatgtaagatgaaa-----gtatgtatctttctctttgttctgaaat 51862189  T
Q  113 caatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctcttcaattgtaatttg 212  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  51862188 caatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatgtttccctagctaaatatagatgaaatgtctcttcaattgtaatatg 51862089  T
Q  213 gaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaattaca 312  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51862088 gaacaatagaatcgctcattcctcaattctcattagcatttagcaaatatagatagaaaaactgccatagatcagttactttgagttatcagaaattaca 51861989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 39482302 - 39482500
Alignment:
Q  13 aaaatgaccaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaac 112  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||     ||||||||||||||||||||||||||||||    
T  39482302 aaaatgaccaactaaatcatccattcatactgaaattgaatttaaaaataagaagtgtaagatga-----aagtatgtatctttctctttgttctgaaac 39482396  T
Q  113 caatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctcttcaattgtaatttg 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39482397 caatggatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctcttcaattgtaatttg 39482496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 336 - 569
Target Start/End: Complemental strand, 51861945 - 51861698
Alignment:
Q  336 gaaggctacacaaaaccaatgttgtctccatatgttggaaaaaatcatatgcagggaattagaaacagataatatgcatagaaatagaaacaaataatac 435  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  51861945 gaaggctacaccaaaccaacgttgtctccatatgttggaaaaaatcatatg---ggaattagaaacagataatatgcatagaaatagaaacaaataatac 51861849  T
Q  436 cttaatttttcttgtgacttctttatcccatgcttcttcagttcttcctgaaacaa----------------ataaggacccacctataacacaaatgaa 519  Q
    ||||||||| ||| ||| |||| |||||||||||| |||||||||||||| |||||                ||||||||||||||||||||||||||||    
T  51861848 cttaattttccttatgatttctgtatcccatgcttgttcagttcttcctggaacaaaaaatgatgaataaagataaggacccacctataacacaaatgaa 51861749  T
Q  520 gaaaacagg-aaaaaatgagtagaacataaaatgatcataaaattagtaag 569  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51861748 gaaaacaggaaaaaaatgagtagaacataaaatgatcataaaattagtaag 51861698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 7807638 - 7807689
Alignment:
Q  214 aacaatagaaccgctcattcctcaattctcattagcaattagcaaatataga 265  Q
    |||||||| |||||||| ||||||||||| |||||||||  |||||||||||    
T  7807638 aacaatagtaccgctcaatcctcaattcttattagcaatcggcaaatataga 7807689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 75 - 316
Target Start/End: Original strand, 22157786 - 22158028
Alignment:
Q  75 tgaaatgaaagta-tgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccct 173  Q
    ||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  22157786 tgaaatgaaagaaatgtatctttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaatcctgtcatgtttccct 22157885  T
Q  174 atctaaatatagatgaaatgtctcttcaattgtaatttggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaa 273  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22157886 atctaaatatagatgaaatgtctcttcaattgtaatctggaacaatagaaccgctcattcctcaattctcattagcaattagaaaatatagatagaaaaa 22157985  T
Q  274 ctgccataaatcagttactttgagttatcagaaattacatatg 316  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  22157986 ctgccatacattagttactttgagttatcagaaattacatatg 22158028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 333 - 569
Target Start/End: Original strand, 22158065 - 22158317
Alignment:
Q  333 aaagaaggctacacaaaaccaatgttgtctccatatgttggaaaaaatcatatgcagggaattagaaacagataatatgcatagaaatagaaacaaataa 432  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22158065 aaagaaggctacaccaaacaaatgttttctccatatgttggaaaaaatcatatgcagggaattagaaagagataatatgaatagaaatagaaacaaataa 22158164  T
Q  433 taccttaatttttcttgtgacttctttatcccatgcttcttcagttcttcctgaaacaa----------------ataaggacccacctataacacaaat 516  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||||| | |||||||                |||||||||||||||||||||||||    
T  22158165 taccttaattttccttatgacttctgtatcccatgcttcttcagttctttccgaaacaaaaaatgatgaataaagataaggacccacctataacacaaat 22158264  T
Q  517 gaagaaaacaggaaaaaatgagtagaacataaaatgatcataaaattagtaag 569  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  22158265 gaagaaaacaggaaaaaatgagtagaacataatatgataataaaattagtaag 22158317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 22157697 - 22157790
Alignment:
Q  13 aaaatgaccaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaa 111  Q
    |||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||     |||||||||||||||||||||||||||||||||    
T  22157697 aaaatgaccaactaaatcatccattcatactgaaattgaaattgaaattaagaagtgtaag-----atgaaagtatgtatctttctctttgttctgaaa 22157790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 9765782 - 9765713
Alignment:
Q  232 tcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttat 301  Q
    ||||||||||||| |||||||| ||||||||||||||| || ||| |||||||||||||||| |||||||    
T  9765782 tcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 9765713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 9766039 - 9765844
Alignment:
Q  13 aaaatgaccaactaaatcatccattcatgctggaattgaaattaaaaa-taagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaa 111  Q
    ||||| || |||||||| |||||||||| ||  ||||||||||||||| |||||||||| | ||| | |||||   |||||||  |||||||||||||||    
T  9766039 aaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatgga-tgaaa---tgtatct--ctctttgttctgaaa 9765946  T
Q  112 ccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctctt-caattgtaatt 210  Q
     || | ||| ||| ||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | ||||||||||||||| |||||||||||    
T  9765945 tcattggatcatagaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtctcttgcaattgtaatt 9765848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 87 - 316
Target Start/End: Original strand, 9332858 - 9333087
Alignment:
Q  87 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatataga 186  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  9332858 atgtatttttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatgtttccctatctaaagataga 9332957  T
Q  187 tgaaatgtctcttcaattgtaatttggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatca 286  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  9332958 tgaaatgtctcttcaattgtaatctggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaataactgccatagatca 9333057  T
Q  287 gttactttgagttatcagaaattacatatg 316  Q
    ||||||||||||||||||||||||||||||    
T  9333058 gttactttgagttatcagaaattacatatg 9333087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 333 - 569
Target Start/End: Original strand, 9333124 - 9333377
Alignment:
Q  333 aaagaaggctacacaaaaccaatgttgtctccatatgttggaaaa-aatcatatgcagggaattagaaacagataatatgcatagaaatagaaacaaata 431  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  9333124 aaagaaggctacaccaaaccaatgttgtctccatatgttggaaaaaaatcatatgtagggaattagaaacagataacatgcatagaaatagaaacaaata 9333223  T
Q  432 ataccttaatttttcttgtgacttctttatcccatgcttcttcagttcttcctgaaac----------------aaataaggacccacctataacacaaa 515  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||    
T  9333224 ataccttaattttccttgtgacttctgtatcccatgcttcttcagttcttcctgaaacaaaaaatgatgaataaaaataaggacccacctataacacaaa 9333323  T
Q  516 tgaagaaaacaggaaaaaatgagtagaacataaaatgatcataaaattagtaag 569  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  9333324 tgaagaaaacagaaaaaaatgagtacaacataaaatgatcataaaattagtaag 9333377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 9332757 - 9332849
Alignment:
Q  13 aaaatgaccaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaa 111  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||    
T  9332757 aaaatcaccaactaaatcatccattcatactgaaattgaaattaaaaataagaagtgtaag-----atgaaagtatgtat-tttctctttgttctgaaa 9332849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 27273125 - 27273164
Alignment:
Q  214 aacaatagaaccgctcattcctcaattctcattagcaatt 253  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  27273125 aacaatagagccgctcaatcctcaattctcattagcaatt 27273164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 43651710 - 43651807
Alignment:
Q  214 aacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaattac 311  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||||| ||||||| |||| ||||    
T  43651710 aacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttattagaagttac 43651807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 22647851 - 22647907
Alignment:
Q  23 actaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 79  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  22647851 actaaataatccattcatactgaaattgaaattaaaaataagaagtgtaagatgaaa 22647907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 22647938 - 22648003
Alignment:
Q  87 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggt 152  Q
    |||||||||| ||| |||||||||| |||| ||||||||||||||||| |||||| ||| ||||||    
T  22647938 atgtatctttatctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggt 22648003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 43651549 - 43651666
Alignment:
Q  96 tctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtc 195  Q
    |||||||||| ||||| || | ||| ||||||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | |||||||||||    
T  43651549 tctctttgttatgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtc 43651646  T
Q  196 tctt-caattgtaatttgga 214  Q
    |||| |||||||||||||||    
T  43651647 tcttgcaattgtaatttgga 43651666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 21114919 - 21115016
Alignment:
Q  214 aacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaattac 311  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| || ||  |||||||||||||||| ||||||| |||| ||||    
T  21114919 aacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctatcataaatcagttacttagagttattagaagttac 21115016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 21114680 - 21114875
Alignment:
Q  13 aaaatgaccaactaaatcatccattcatgctggaattgaaattaaaaa-taagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaa 111  Q
    ||||| || |||||||| || ||||||| ||  ||||||||||||||| |||||||||| | || | ||||||   |||||||  |||||||||||||||    
T  21114680 aaaatcacaaactaaattattcattcatactaaaattgaaattaaaaaataagaagtgtcaaat-agatgaaa---tgtatct--ctctttgttctgaaa 21114773  T
Q  112 ccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctctt-caattgtaatt 210  Q
     || | ||| ||||||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | ||||||||||||||| |||||||||||    
T  21114774 tcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtctcttgcaattgtaatt 21114871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 27030117 - 27030052
Alignment:
Q  87 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggt 152  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||| |||||| ||| ||||||    
T  27030117 atgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggt 27030052  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 27030204 - 27030148
Alignment:
Q  23 actaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 79  Q
    ||||||| |||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  27030204 actaaataatccattcatactaaaattgaaattaaaaataagaagtgtaagatgaaa 27030148  T

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Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 81426 - 81348
Alignment:
Q  217 aatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttg 295  Q
    ||||||||| |||| |||||||||||||| ||||||  ||||||||| ||||||||||||||| ||||  |||||||||    
T  81426 aatagaacctctcaatcctcaattctcatcagcaatcggcaaatataaatagaaaaactgccacaaatttgttactttg 81348  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 13550183 - 13550249
Alignment:
Q  13 aaaatgaccaactaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 79  Q
    ||||| ||||||||||| |||||||||| ||| ||||||||| |||||||||||||||| |||||||    
T  13550183 aaaatcaccaactaaattatccattcatactgaaattgaaataaaaaataagaagtgtatgatgaaa 13550249  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 13550382 - 13550421
Alignment:
Q  214 aacaatagaaccgctcattcctcaattctcattagcaatt 253  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  13550382 aacaatagaacccctcaatcctcaattctcattagcaatt 13550421  T

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Target: scaffold0755 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 5500 - 5435
Alignment:
Q  87 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggt 152  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||| |||||| ||| ||||||    
T  5500 atgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggt 5435  T

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Target: scaffold0755; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 5584 - 5531
Alignment:
Q  23 actaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 79  Q
    ||||||| |||||||||| ||| ||||||||||||||||   |||||||||||||||    
T  5584 actaaataatccattcatactgaaattgaaattaaaaat---aagtgtaagatgaaa 5531  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 24863748 - 24863824
Alignment:
Q  232 tcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatc--agttactttgagttatcagaa 306  Q
    ||||||||| ||||||||||||  || ||||||||||| |||||| ||||||||  |||||||||||||||| ||||    
T  24863748 tcctcaattgtcattagcaattgacagatatagatagagaaactgtcataaatcaaagttactttgagttattagaa 24863824  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 24863506 - 24863534
Alignment:
Q  46 aattgaaattaaaaataagaagtgtaaga 74  Q
    |||||||||||||||||||||||||||||    
T  24863506 aattgaaattaaaaataagaagtgtaaga 24863534  T

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