View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_low_8 (Length: 599)

Name: NF18336_low_8
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_low_8
NF18336_low_8
[»] chr3 (2 HSPs)
chr3 (282-589)||(45509028-45509338)
chr3 (19-123)||(45509431-45509535)
[»] chr2 (2 HSPs)
chr2 (282-588)||(19845078-19845383)
chr2 (19-151)||(19844823-19844955)
[»] chr5 (1 HSPs)
chr5 (401-485)||(40946560-40946645)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 282 - 589
Target Start/End: Complemental strand, 45509338 - 45509028
Alignment:
Q  282 gaggtgaaagaacttctctttccatttatttggttnnnnnnnngtgggaagagaaatttaattattttgaaaatgatatatagaattttactccgatgag 381  Q
    |||| ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45509338 gaggcgaaagaacttctctttccatttatttggttaaaaaaaagtgggaagagaaatttaattattttgaaaatgatatatagaattttactccaatgag 45509239  T
Q  382 aagtttcatccctaagctgcttaactcacaaatataatttatctctcttct---atatttcttgtggactctcccatttttacaattttaaatgcataaa 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  45509238 aagtttcatccctaagctgcttaactcacaaatataatttatctctcttcttctatatttcttgtggactctcccatttttacaattttaaatgcataaa 45509139  T
Q  479 attaatattataatcctattgaactgaagtttcttaaattagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaaacaatatttt 578  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45509138 attaatattataatcctgttgaactgaagtttcttaaatcagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaagcaatatttt 45509039  T
Q  579 attaccctatg 589  Q
    |||||||||||    
T  45509038 attaccctatg 45509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 45509535 - 45509431
Alignment:
Q  19 cttctatgtgatacttataaattgctttcaaagtaaattctacttcatatttatgttgatcttctctttaaaatttagatagataaaacttggtgaagaa 118  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  45509535 cttctacgtgatacttataaattgctttcaaagtaaattctacctcatatttctcttgatcttctctttaaaatttagatagataaaacttggtgaagaa 45509436  T
Q  119 gggag 123  Q
    |||||    
T  45509435 gggag 45509431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 282 - 588
Target Start/End: Original strand, 19845078 - 19845383
Alignment:
Q  282 gaggtgaaagaacttctctttccatttatttggttnnnnnnnn-gtgggaagagaaatttaattattttgaaaatgatatatagaattttactccgatga 380  Q
    |||| ||| ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19845078 gaggcgaaggaacttctctttccatttatttggttaaaaaaaaagtgggaagagaaatttaattattttgaaaatgatatatagaattttactccaatga 19845177  T
Q  381 gaagtttcatccctaagctgcttaactcacaaatataatttatctctcttctatatttcttgtgg-actctcccatttttacaattttaaatgcataaaa 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19845178 gaagtttcatccctaagctgcttaactcacaaatataatttatct---ttctatatttcttgtgggactctcccatttttacaattttaaatgcataaaa 19845274  T
Q  480 ttaatattataatcctattgaactgaagtttcttaaattagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaaacaatatttta 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19845275 ttaatattataatcctattgaactgaagtttcttaaattagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaaacaatatttta 19845374  T
Q  580 ttaccctat 588  Q
    |||||||||    
T  19845375 ttaccctat 19845383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 19844823 - 19844955
Alignment:
Q  19 cttctatgtgatacttataaattgctttcaaagtaaattctacttcatatttatgttgatcttctctttaaaatttagatagataaaacttggtgaagaa 118  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  19844823 cttctacgtgatacttataaattgctttcaaagtaaattctacctcatatttctcttgatcttctctttaaaatttagatagataaaacttggtgaagaa 19844922  T
Q  119 gggagcgaatgagagaatgaggaaaatgagagg 151  Q
    |||||||||||||||||||||||||||||||||    
T  19844923 gggagcgaatgagagaatgaggaaaatgagagg 19844955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 485
Target Start/End: Original strand, 40946560 - 40946645
Alignment:
Q  401 cttaactcacaaatataatttatctctcttctatatttcttgtggactctcccatttttacaatttt-aaatgcataaaattaata 485  Q
    |||||| |||| |||| |||| ||||||||| ||||||| |||  || |||||||||| ||| |||| ||||||||||||| ||||    
T  40946560 cttaacccacatatatcatttttctctcttccatatttcatgttcacactcccattttaacactttttaaatgcataaaatcaata 40946645  T

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