View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18336_low_9 (Length: 552)

Name: NF18336_low_9
Description: NF18336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18336_low_9
NF18336_low_9
[»] chr5 (19 HSPs)
chr5 (16-544)||(40283119-40283647)
chr5 (338-543)||(40332959-40333164)
chr5 (299-543)||(40386237-40386481)
chr5 (338-544)||(40375991-40376197)
chr5 (16-208)||(40326383-40326575)
chr5 (21-208)||(40311103-40311290)
chr5 (16-207)||(40409057-40409248)
chr5 (21-199)||(40362323-40362501)
chr5 (16-207)||(40406348-40406539)
chr5 (113-215)||(40303490-40303592)
chr5 (364-502)||(40598559-40598697)
chr5 (16-208)||(40256895-40257087)
chr5 (390-502)||(40276849-40276961)
chr5 (108-216)||(40333946-40334054)
chr5 (222-271)||(40597781-40597830)
chr5 (108-216)||(40387224-40387332)
chr5 (109-217)||(40597647-40597755)
chr5 (21-199)||(40457309-40457487)
chr5 (19-63)||(40277978-40278022)


Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 16 - 544
Target Start/End: Complemental strand, 40283647 - 40283119
Alignment:
Q  16 caaagttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40283647 caaagttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcctttcagttcctcatcatc 40283548  T
Q  116 catgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaatctgccat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283547 catgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaatctgccat 40283448  T
Q  216 ttaccaagtgatactttccattcctcaattggtttacttccgaaggaagatcccacctttataattttttcaggtaacccttcacatttcccatttagtg 315  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283447 ttagcaagtgatgctttccattcctcaattggtttacttccgaaggaagatcccacctttataattttttcaggtaacccttcacatttcccatttagtg 40283348  T
Q  316 cctttattttttcatataattcattaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283347 cctttattttttcatataattcattaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttt 40283248  T
Q  416 tagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283247 tagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttt 40283148  T
Q  516 tgtctttcaactttcgtatagcctttgct 544  Q
    ||||||||||||||| |||||||||||||    
T  40283147 tgtctttcaactttcatatagcctttgct 40283119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 338 - 543
Target Start/End: Complemental strand, 40333164 - 40332959
Alignment:
Q  338 attaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatct 437  Q
    |||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  40333164 attaaattcaatccatgatggtggttttgattgtaatttaagattctccattttttgcatgattatgtctgcttcttttagccactcaaacacaacatct 40333065  T
Q  438 ctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcgtatagc 537  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  40333064 ctaaccttttcagttttacgatcaattgcttcaacttttgcacgcacacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcatgtagc 40332965  T
Q  538 ctttgc 543  Q
    ||||||    
T  40332964 ctttgc 40332959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 299 - 543
Target Start/End: Complemental strand, 40386481 - 40386237
Alignment:
Q  299 acatttcccatttagtgcctttattttttcatataattcattaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatg 398  Q
    |||||||  |||||||||  | |||||||| |  |||| |||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||| |||    
T  40386481 acatttcttatttagtgctgtaattttttcctgcaatttattaaattcaatccatgatggtggttttgattgtaatttaagattctccattttttgcatg 40386382  T
Q  399 atcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttg 498  Q
    |  || |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  40386381 actatttctgcttcttttagccactcaaacacaacatctctaaccttttcagttttactgtcaattgcttcaacttgtgcacgcacacgatcacgatttg 40386282  T
Q  499 aaatgagtttcttcttttgtctttcaactttcgtatagcctttgc 543  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  40386281 aaatgagtttcttcttttgtctttcaactttcatatagcctttgc 40386237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 338 - 544
Target Start/End: Complemental strand, 40376197 - 40375991
Alignment:
Q  338 attaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatct 437  Q
    |||||||||| |||||||||| ||||||||||||| || ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  40376197 attaaattcaatccatgatggtggttttgattgtactgcaagattctccacttcttgtatgattatgtctgttttttttagccactcaaacacaacatct 40376098  T
Q  438 ctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcgtatagc 537  Q
    || |||||||||||||||  |||||||||||||||||||||| || ||||||| |||||||||  |||||| ||||||||||||||||||||| ||||||    
T  40376097 ctgaccttttcagttttaggatcaattgcttcaacttttgcatgcacacgatcgcgatttgaatagagtttgttcttttgtctttcaactttcatatagc 40375998  T
Q  538 ctttgct 544  Q
    |||||||    
T  40375997 ctttgct 40375991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 40326575 - 40326383
Alignment:
Q  16 caaagttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatc 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||||| ||||||||||||    
T  40326575 caaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttgattagagatgatgaaatttcattcccacccttcaattcctcatcatc 40326476  T
Q  116 catgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaat 208  Q
    ||||||||||||||||||||| || |||| |  || ||||||||||||||| ||||| |  ||||||||||| ||| ||||||| || |||||    
T  40326475 catgaaggtcttgaacccctctcgacacagaatattatagagaaaacctgtgaaagagtagcgagtatcttctcctttaaaacttagaaaaat 40326383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 40311290 - 40311103
Alignment:
Q  21 ttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatccatga 120  Q
    |||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||||||||| || || |||||||   |||||||||||||||    
T  40311290 tttttagagaaaacaataactgaaatccttgatgcctcaattgctttgattagagaagatgaaatttcgtctccacccttcaacccctcatcatccatga 40311191  T
Q  121 aggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaat 208  Q
    ||||||||||||| |||||||| | |||||||||||||||||| |||||||| | |||||||||||  ||||||||||||| ||||||    
T  40311190 aggtcttgaacccttcccggcatagagcatcatagagaaaacccgtaaaagagtcacgagtatcttttcctctaaaactgatgaaaat 40311103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 40409248 - 40409057
Alignment:
Q  16 caaagttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatc 115  Q
    ||||||||||||| |||||||||||||||| |||||||   ||||||||||||| || || |  ||||||||  |  || ||||||| | ||||||||||    
T  40409248 caaagttttcagacaaaacaacaattgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatc 40409149  T
Q  116 catgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaa 207  Q
    ||||||| | ||||| |||||  | | |||| ||| ||||||||| ||||||||||| |  |||||||||||||| | ||||||||| ||||    
T  40409148 catgaagattttgaatccctcatgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaaaa 40409057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 40362501 - 40362323
Alignment:
Q  21 ttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatccatga 120  Q
    |||||||| |||||||||||||||| |||||||   ||||||||||||| ||||| |  ||||||||  |  || |||| || | |||||||||||||||    
T  40362501 ttttcagacaaaacaacaattgaaagccttgatttttcaattgctttgagtagagtttgtgaaatttggtttccaccctccaatccctcatcatccatga 40362402  T
Q  121 aggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaact 199  Q
    || ||||||| ||||| || |||||||||| |||||| || || ||||| || |  |||||||||||||| | ||||||    
T  40362401 agatcttgaatccctcacgacacaaagcatgatagaggaatcccgtaaaggagtagcgagtatcttccccgcaaaaact 40362323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 40406539 - 40406348
Alignment:
Q  16 caaagttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatc 115  Q
    ||||||||||||| |||||||||||||||| |||||||   |||||||||| ||  |||| |  ||||||||  |  || |||| || | ||||||||||    
T  40406539 caaagttttcagacaaaacaacaattgaaagccttgatttttcaattgcttcgagaagagtttgtgaaatttggtttccaccctccaatccctcatcatc 40406440  T
Q  116 catgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaa 207  Q
    ||||||| ||||||| |||||    | ||||||||  |||||||| |||||||| || |  |||||||||||||| | ||||||||| ||||    
T  40406439 catgaagatcttgaatccctcattactcaaagcatggtagagaaatcctgtaaaggagtagcgagtatcttccccgcaaaaactgagaaaaa 40406348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 40303592 - 40303490
Alignment:
Q  113 atccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaatctgc 212  Q
    ||||||||| || ||||| || || || || | |||||||||||||||||| |||||||| |  ||||||||||| ||||||||||||| ||||||||||    
T  40303592 atccatgaatgttttgaatccttctcgacagagagcatcatagagaaaacccgtaaaagagtaccgagtatcttctcctctaaaactgatgaaaatctgc 40303493  T
Q  213 cat 215  Q
    |||    
T  40303492 cat 40303490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 502
Target Start/End: Original strand, 40598559 - 40598697
Alignment:
Q  364 ttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaat 463  Q
    ||||||||| ||| ||||| || |  ||||| ||||  || ||||||||||||||||||||||||||| ||||  | ||||||||||||||   |||| |    
T  40598559 ttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagt 40598658  T
Q  464 tgcttcaacttttgcacgcgcacgatcacgatttgaaat 502  Q
    ||||||||||||| | ||| || |||| |||||||||||    
T  40598659 tgcttcaacttttacgcgcacaagatctcgatttgaaat 40598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 40256895 - 40257087
Alignment:
Q  16 caaagttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatc 115  Q
    |||||||||| || ||||||| ||| |||| ||||||||| |||||||| ||||  || ||   ||||||||  || || |||| || | |  | |||||    
T  40256895 caaagttttcggataaaacaataatggaaagccttgatgcttcaattgcattgagaagtgaaagtgaaatttggtcaccaccctccaatcctccttcatc 40256994  T
Q  116 catgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaat 208  Q
    ||||||||| || || ||  || |||||||||||  ||||||| | ||||||||||| | |||||||||||| |||| ||| ||||| |||||    
T  40256995 catgaaggttttaaatccgacctggcacaaagcacgatagagagagcctgtaaaagaataacgagtatcttctcctcgaaagctgagaaaaat 40257087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 502
Target Start/End: Complemental strand, 40276961 - 40276849
Alignment:
Q  390 tcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgat 489  Q
    ||||||||||  ||||||| ||||||||||||||  | |||| |||| || ||||| ||| || ||  ||||||||||| |  |||||||| | ||||||    
T  40276961 tcttgtatgagtatgtctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcactcacacgat 40276862  T
Q  490 cacgatttgaaat 502  Q
    |||||||||||||    
T  40276861 cacgatttgaaat 40276849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 40334054 - 40333946
Alignment:
Q  108 tcatcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaa 207  Q
    |||||||||||||| |||||||| ||| |  || | ||||| | | | |||  |||||||||||| |  |||||||||||||||||||||||||| || |    
T  40334054 tcatcatccatgaaagtcttgaatcccccttgggataaagcttgaaaaagactacctgtaaaagagtagcgagtatcttcccctctaaaactgagaaaca 40333955  T
Q  208 tctgccatt 216  Q
    |||||||||    
T  40333954 tctgccatt 40333946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 40597781 - 40597830
Alignment:
Q  222 agtgatactttccattcctcaattggtttacttccgaaggaagatcccac 271  Q
    |||||| |||||||||||||||||||||||| ||  ||||||||||||||    
T  40597781 agtgatgctttccattcctcaattggtttacctcttaaggaagatcccac 40597830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 40387332 - 40387224
Alignment:
Q  108 tcatcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaa 207  Q
    |||||||||||||| |||||||| ||| |  || | ||||| | | | |||  |||||||||||| |  |||||||||||||||||||||||||| || |    
T  40387332 tcatcatccatgaaagtcttgaatcccccttgggataaagcttgaaaaagactacctgtaaaagagtagcgagtatcttcccctctaaaactgagaaaca 40387233  T
Q  208 tctgccatt 216  Q
    ||| |||||    
T  40387232 tctcccatt 40387224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 40597647 - 40597755
Alignment:
Q  109 catcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaat 208  Q
    |||||||||||||||||||||| ||| |  | || ||||| | ||| |||  |||||||||||| |  || |||||||| ||||||||||| | ||||||    
T  40597647 catcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaat 40597746  T
Q  209 ctgccattt 217  Q
     ||||||||    
T  40597747 ttgccattt 40597755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 40457309 - 40457487
Alignment:
Q  21 ttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatccatga 120  Q
    ||||| || |||||||||||||| | |||||||   ||||||||||| |  |||| |  ||||||||  |  || |||| || | |||||||||||||||    
T  40457309 ttttcggacaaaacaacaattgagagccttgatttttcaattgcttttaaaagagtttgtgaaatttggtttccaccctccaatccctcatcatccatga 40457408  T
Q  121 aggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaact 199  Q
    || ||||||| |||||  | | |||||||| |||||| || || ||||| || |  |||||||||||||| | ||||||    
T  40457409 agatcttgaatccctctagacgcaaagcatgatagaggaatcccgtaaaggagtagcgagtatcttccccgcaaaaact 40457487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 40278022 - 40277978
Alignment:
Q  19 agttttcagaaaaaacaacaattgaaatccttgatgcctcaattg 63  Q
    |||||||||| |||||||||||||||| ||||| ||| |||||||    
T  40278022 agttttcagacaaaacaacaattgaaagccttgctgcttcaattg 40277978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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