View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18337_high_2 (Length: 426)
Name: NF18337_high_2
Description: NF18337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18337_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 27848150 - 27847881
Alignment:
| Q |
13 |
gtattaacctaataagatcaaaagtgattcactccatttttggtaaagttaaaagtcattttgagaattttgtttatataattaattttaattcgaagtt |
112 |
Q |
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| T |
27848150 |
gtattaacctaataagatcaaaagtgattcactccatttttggtaaagttaaaagtgattttgagaattttgtttatataattgattttaatttgaagtt |
27848051 |
T |
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| Q |
113 |
gattagaannnnnnnggttaccgaagttgattagaattgattttaatttaaaat-aaatttgtagcttttaactctaattactttacattttttatgaca |
211 |
Q |
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| T |
27848050 |
tattagaatttttttggttaccgaagttgattagaattgattttaatttaaaataaaatttgtagcttttaactctaattactttacattttttatgaca |
27847951 |
T |
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| Q |
212 |
aaaaactctaattacaatttacatgatagtatatgttccgacctcaagttcataacaccatattttcaagat |
283 |
Q |
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| T |
27847950 |
aaaaactctaattac--tttacatgatagtatatgttccaacctcaagttcataacatcatattttcaagat |
27847881 |
T |
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