View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18337_high_3 (Length: 288)
Name: NF18337_high_3
Description: NF18337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18337_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 51268742 - 51268872
Alignment:
| Q |
3 |
tccaccaccggagaaacgttcagagaccaccggcgaccaccaacaccatgttgcatggactagtatccctcaagagagatgggaaggagaactgcttgtt |
102 |
Q |
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| T |
51268742 |
tccaccaccggagaaacgttcagagaccaccggcgaccaccaacaccatgttgcatggactagtatccctcaagagagatgggaaggagaactgcttgtt |
51268841 |
T |
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| Q |
103 |
caaggacatattccactctggctggtgagtg |
133 |
Q |
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| T |
51268842 |
caaggacatattccactctggctggtgagtg |
51268872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 51268889 - 51269004
Alignment:
| Q |
158 |
cgtaacactcatagtttttatcaaataatgccattttatatttttattgccgaaaaaatacattattaatttcaacatgaaaactatacgttaaaaagaa |
257 |
Q |
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| T |
51268889 |
cgtaacactcatagtttttatcaaataatgccattttatatttttattgccgaaaaaatacattattaatttcaacatgaaaactatacgttaaaaagaa |
51268988 |
T |
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| Q |
258 |
aaagaacatcgtttat |
273 |
Q |
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| T |
51268989 |
aaagaacatcgtttat |
51269004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 23306787 - 23306914
Alignment:
| Q |
6 |
accaccggagaaacgttcagagaccaccggcgaccaccaacaccatgttgcatggactagtatccctcaagagagatgggaaggagaactgcttgttcaa |
105 |
Q |
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| T |
23306787 |
accaccggagaaacgttcagagaccaccggtgaccaccaacaccatgttgcatggactagtatccatcaagagagatgggaaggagaactgcttgttcaa |
23306886 |
T |
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| Q |
106 |
ggacatattccactctggctggtgagtg |
133 |
Q |
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| T |
23306887 |
ggacatattccactctggctggtgagtg |
23306914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 23306948 - 23306994
Alignment:
| Q |
168 |
atagtttttatcaaataatgcca-ttttatatttttattgccgaaaa |
213 |
Q |
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| T |
23306948 |
atagttttaatcaaataaagccaattttatatttttattgccgaaaa |
23306994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 23306990 - 23307027
Alignment:
| Q |
236 |
gaaaactatacgttaaaaagaaaaagaacatcgtttat |
273 |
Q |
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| T |
23306990 |
gaaaactataaattaaaaagaaaaagaacatcgtttat |
23307027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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