View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18337_high_7 (Length: 204)
Name: NF18337_high_7
Description: NF18337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18337_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 48697722 - 48697897
Alignment:
| Q |
1 |
cttgttgaagataacaagattaacatcatggtgacacaatccatgatgaaacagttgggtcataacatagatgttgtcaataatggagcagaggcggtgc |
100 |
Q |
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| T |
48697722 |
cttgttgaagataacaagattaacatcatggtgacacaatccatgatgaaacagttgggtcataacatagatgttgtcaataatggagcagaggcggtgc |
48697821 |
T |
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| Q |
101 |
gtgcggttcagcgctgtacatatgacctggttctgatggtaatttatggatctcattgcatatgttaaattgactt |
176 |
Q |
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| T |
48697822 |
gtgcggttcagcgctgtacatatgacctggttctgatggtaatttatggatctcattgcatatgttaaattgactt |
48697897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48709027 - 48709078
Alignment:
| Q |
1 |
cttgttgaagataacaagattaacatcatggtgacacaatccatgatgaaac |
52 |
Q |
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| T |
48709027 |
cttgttgaagatgagaagattaatatcatgataacacaatccatgatgaaac |
48709078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3453033 - 3452946
Alignment:
| Q |
1 |
cttgttgaagataacaagattaacatcatggtgacacaatccatgatgaaacagttgggtcataacatagatgttgtcaataatggag |
88 |
Q |
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| T |
3453033 |
cttgttgaagataacaagattaatatcatggtgacaaagtcaatgatgaagcagctaggatatagcatggatgtcgtgaataatggag |
3452946 |
T |
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