View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18337_low_6 (Length: 222)
Name: NF18337_low_6
Description: NF18337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18337_low_6 |
 | |
|
| [»] chr1 (11 HSPs) |
| |
|
| [»] scaffold0400 (3 HSPs) |
| | |
|
| [»] scaffold0365 (3 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 15016886 - 15016682
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016886 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
15016787 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016786 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
15016687 |
T |
|
| Q |
218 |
ggaga |
222 |
Q |
| |
|
||||| |
|
|
| T |
15016686 |
ggaga |
15016682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 15001878 - 15001674
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | | ||||||||||||||||||||||| || |
|
|
| T |
15001878 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctaactcctttggaatttttcgcattagatggtttgaagacaagttaagctc |
15001779 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15001778 |
ctgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttttaggcttgtgagattcttgcactttccccaattt |
15001679 |
T |
|
| Q |
218 |
ggaga |
222 |
Q |
| |
|
||||| |
|
|
| T |
15001678 |
ggaga |
15001674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 15024888 - 15024684
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
15024888 |
aaaggtgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatttttcccgttagatggtttgaagacaagttaagctc |
15024789 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
217 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15024788 |
ctgtaaatttgttgcgctgcctagctctggtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaattt |
15024689 |
T |
|
| Q |
218 |
ggaga |
222 |
Q |
| |
|
||||| |
|
|
| T |
15024688 |
ggaga |
15024684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 15032229 - 15032025
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
15032229 |
aaaggtgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatttttcccgttagatggtttgaagacaagttaagctc |
15032130 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
217 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032129 |
ctgtaaatttgttgcgctgcctagctctggtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaattt |
15032030 |
T |
|
| Q |
218 |
ggaga |
222 |
Q |
| |
|
||||| |
|
|
| T |
15032029 |
ggaga |
15032025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 14467574 - 14467376
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
14467574 |
aaagatgattgttacttaccgagagttggatcaacaaagataagctttctagctcctttggaatttttcccgtaagatggtttgaagacaggtttagttc |
14467475 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatt |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||| ||||| || ||| |||||||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
14467474 |
atgtaaatttgttgctcggcctagttctggcggtatgcttcctgttaaattgttattgaagattttaaggcatgtgagattcatgcattttccccaatt |
14467376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 15036791 - 15036587
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||||||| ||| | |||| |||||||||||||||||| || |
|
|
| T |
15036791 |
aaagatgattgttacttaacgagagtttgaacaacaaagataaatattttagctcctttggaatttttcccattagatcgtttgaagacaagttaagctc |
15036692 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15036691 |
ctgtaaatttgttgctctgcctagttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaattt |
15036592 |
T |
|
| Q |
218 |
ggaga |
222 |
Q |
| |
|
||||| |
|
|
| T |
15036591 |
ggaga |
15036587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 15010771 - 15010567
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||| ||| | ||||||||||||||||||||||| || |
|
|
| T |
15010771 |
aaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagctc |
15010672 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
217 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
15010671 |
ctgtaaatttgttgcacttcctagttctggtggtattcttcctgttaaattattaccagagatttttaggcttgtgagaatcttgcactttccccaattt |
15010572 |
T |
|
| Q |
218 |
ggaga |
222 |
Q |
| |
|
||||| |
|
|
| T |
15010571 |
ggaga |
15010567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 14503753 - 14503552
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
14503753 |
aaagatgattgttacttatcgagagtttgatcaacaaagacaagtttcctagatcctttggaatttttccagtaagatggtttgatgacaagttaagttc |
14503654 |
T |
|
| Q |
118 |
atgtaaatttgttg-ctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatt |
216 |
Q |
| |
|
||||||||| ||| ||| ||| | |||| ||||||| ||||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14503653 |
atgtaaattaattgtctcagcc-aattcttgtggtatatttcctgttaaattgttattggagattttaaggcttgtgagactcttgcactttccccaatt |
14503555 |
T |
|
| Q |
217 |
tgg |
219 |
Q |
| |
|
||| |
|
|
| T |
14503554 |
tgg |
14503552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 14533086 - 14533287
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||| ||||||||||||||| ||||||||| ||||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
14533086 |
aaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctctggaatttttccagtaagatggtttgaagacagattaagttc |
14533185 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
217 |
Q |
| |
|
||||| | |||||||| ||||||||| | ||||||||||| || ||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
14533186 |
ttgtaattgtgttgctccacctagttcttgaggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaattt |
14533285 |
T |
|
| Q |
218 |
gg |
219 |
Q |
| |
|
|| |
|
|
| T |
14533286 |
gg |
14533287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 14522965 - 14523169
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||| |||||||||| |||| |||||||||||||| || |||| || ||||| ||||||| |||| |
|
|
| T |
14522965 |
aaagatgattattacttatcgagagttggatcagtgcagataagtttcctagatcctttggaatttttcctataagttgatttgaggacaagtcaagtat |
14523064 |
T |
|
| Q |
118 |
atgtaaatttgttgct-ctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatt |
216 |
Q |
| |
|
||||||||| |||||| | ||| | ||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
14523065 |
atgtaaattggttgcttcagccaa-ttctggtggtatgcttcctattaaattattattggagattttaaggcttgtcagattcttgcacttcccccaatt |
14523163 |
T |
|
| Q |
217 |
tggaga |
222 |
Q |
| |
|
|||||| |
|
|
| T |
14523164 |
tggaga |
14523169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 15040403 - 15040329
Alignment:
| Q |
142 |
ttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatt |
216 |
Q |
| |
|
|||| ||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
15040403 |
ttctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgcgttttccccaatt |
15040329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 12550 - 12349
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
12550 |
aaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaatttttccagtaagatggtttgaagacagattaagttc |
12451 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
217 |
Q |
| |
|
||||| | |||||||| ||||||||| | ||||||||||| || ||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
12450 |
ttgtaattgtgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaattt |
12351 |
T |
|
| Q |
218 |
gg |
219 |
Q |
| |
|
|| |
|
|
| T |
12350 |
gg |
12349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 6134 - 6058
Alignment:
| Q |
146 |
ggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggaga |
222 |
Q |
| |
|
|||||||||||||||| | |||||| ||| | | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6134 |
ggtggtatgcttcctgatatattattattgaaaactttaaggcttgtgagattcttgcactttccccaatttggaga |
6058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 6261 - 6197
Alignment:
| Q |
19 |
aagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
83 |
Q |
| |
|
|||||||||| |||||| | |||| | |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
6261 |
aagatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttggaattt |
6197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 13193 - 12992
Alignment:
| Q |
18 |
aaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttc |
117 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
13193 |
aaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaatttttccagtaagatggtttgaagacagattaagttc |
13094 |
T |
|
| Q |
118 |
atgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaattt |
217 |
Q |
| |
|
||||| | |||||||| ||||||||| | ||||||||||| || ||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
13093 |
ttgtaattgtgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaattt |
12994 |
T |
|
| Q |
218 |
gg |
219 |
Q |
| |
|
|| |
|
|
| T |
12993 |
gg |
12992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 6778 - 6702
Alignment:
| Q |
146 |
ggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggaga |
222 |
Q |
| |
|
|||||||||||||||| | |||||| ||| | | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6778 |
ggtggtatgcttcctgatatattattattgaaaactttaaggcttgtgagattcttgcactttccccaatttggaga |
6702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 6905 - 6841
Alignment:
| Q |
19 |
aagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
83 |
Q |
| |
|
|||||||||| |||||| | |||| | |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
6905 |
aagatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttggaattt |
6841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 16024819 - 16024755
Alignment:
| Q |
51 |
acaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagt |
115 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||| || |||||||||||||| |||| |||| |
|
|
| T |
16024819 |
acaaagataagttgcttaactcctttggaatttcccctgtgagatggtttgaagataagtcaagt |
16024755 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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