View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18338_high_16 (Length: 217)
Name: NF18338_high_16
Description: NF18338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18338_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 42089024 - 42088836
Alignment:
| Q |
19 |
catcgtgttaccaagcaggacctcatttccctgagaaccagagggtttagacaaaataaatcgagaattcaatcaatggtgtaacgggtttggaccagta |
118 |
Q |
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| T |
42089024 |
catcgtgttaccaagcatgacctcattttcctgagaaccagagggttaagacaaaataaatcgagaattcaatcaatggtgtaacgggtttggaccagta |
42088925 |
T |
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| Q |
119 |
ggcacacggcgcttctcaaccccataacgtgggtcgatcgctgtgtctgaaggatccttctgcactgcaaaaccttgaggatgatgatg |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42088924 |
ggcacacggcgcttctcaaccccataacgtggatcgatcgctgtgtctgaaggatccttctgcactgcaaaaccttgaggatgaagatg |
42088836 |
T |
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