View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18338_high_2 (Length: 446)

Name: NF18338_high_2
Description: NF18338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18338_high_2
NF18338_high_2
[»] chr7 (9 HSPs)
chr7 (4-430)||(25533788-25534212)
chr7 (251-430)||(25526031-25526210)
chr7 (291-429)||(25516202-25516341)
chr7 (288-428)||(25540605-25540741)
chr7 (327-425)||(25539539-25539637)
chr7 (179-232)||(31418966-31419019)
chr7 (179-225)||(21453181-21453227)
chr7 (179-225)||(12003331-12003377)
chr7 (179-215)||(6472699-6472735)
[»] chr8 (6 HSPs)
chr8 (178-226)||(1667822-1667870)
chr8 (178-226)||(16658527-16658575)
chr8 (178-230)||(33360100-33360152)
chr8 (181-230)||(42808382-42808429)
chr8 (193-225)||(32381211-32381243)
chr8 (193-225)||(32435166-32435198)
[»] chr5 (7 HSPs)
chr5 (173-225)||(42740888-42740940)
chr5 (178-225)||(21745033-21745080)
chr5 (179-225)||(32863333-32863379)
chr5 (177-225)||(3173848-3173895)
chr5 (179-227)||(26063041-26063089)
chr5 (179-225)||(18740036-18740081)
chr5 (179-223)||(43299937-43299980)
[»] chr3 (4 HSPs)
chr3 (178-226)||(2339178-2339226)
chr3 (180-222)||(9456119-9456161)
chr3 (179-225)||(52893141-52893187)
chr3 (183-231)||(40922552-40922600)
[»] scaffold0005 (1 HSPs)
scaffold0005 (179-231)||(39323-39375)
[»] chr4 (8 HSPs)
chr4 (179-231)||(14800352-14800404)
chr4 (176-227)||(33754312-33754363)
chr4 (180-230)||(21421920-21421970)
chr4 (179-225)||(46164751-46164797)
chr4 (177-225)||(44504331-44504379)
chr4 (179-225)||(8433371-8433416)
chr4 (194-227)||(20037990-20038023)
chr4 (179-225)||(54785574-54785622)
[»] chr2 (1 HSPs)
chr2 (177-221)||(38978988-38979032)
[»] chr6 (3 HSPs)
chr6 (179-225)||(16497560-16497606)
chr6 (178-231)||(7170715-7170768)
chr6 (179-225)||(14125098-14125143)
[»] chr1 (3 HSPs)
chr1 (181-225)||(26014217-26014261)
chr1 (179-227)||(18994625-18994673)
chr1 (179-225)||(26354696-26354741)
[»] scaffold1160 (1 HSPs)
scaffold1160 (182-225)||(2168-2211)


Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 4 - 430
Target Start/End: Original strand, 25533788 - 25534212
Alignment:
Q  4 atccaaaatctcgatatagctacatctcacgacgacgaagctgcacgtggtgctacaataactcatgtttgttattgtttccagaaacaaattgcagctt 103  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25533788 atccaaaatctcgatatagctacatctcacgacgaccaagctgcacctggtgctacaataactcatgtttgttattgtttccagaaacaaattgcagctt 25533887  T
Q  104 attgttaatggccaggcattgaagagataaagggtcgaggaagggtggagtcttgaaaatgggtcatgcgtggtgcagtggcggaactggggggtggcaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  25533888 attgttaatggccaggcattgaagagataaagggtcgaggaagggtggagtcttgaaaatgggtcatgcgtggtgcagtggcggaactgggg--tggcaa 25533985  T
Q  204 gggggagccaccaccaccccattatttaaatgcttcctgtttatcccacaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacaacata 303  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25533986 gggggagccaccgccaccccattatttaaatgcttcctgtttatcccacaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacaacata 25534085  T
Q  304 tttgtatataaaggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtgtacctttcctatgc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25534086 tttgtatataaaggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtgtaccttttctatgc 25534185  T
Q  404 aactatgtttctctaattgactcttcc 430  Q
    |||||||||||||||||||||||||||    
T  25534186 aactatgtttctctaattgactcttcc 25534212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 251 - 430
Target Start/End: Original strand, 25526031 - 25526210
Alignment:
Q  251 acaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacaacatatttgtatataaaggtacatattcagtagctgaatgtgttcttaggaa 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25526031 acaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacgacatatttgtatatgaaggtacatattcagtagctgaatgtgttcttaggaa 25526130  T
Q  351 tctcgatgcatttgaaagtaaaccaagtaactgaatgtgtacctttcctatgcaactatgtttctctaattgactcttcc 430  Q
    ||||||||||||||||||||||| || ||||||||||||| | |||| |||||| |||||||||||||||||||||||||    
T  25526131 tctcgatgcatttgaaagtaaacaaactaactgaatgtgtgcatttcatatgcagctatgtttctctaattgactcttcc 25526210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 291 - 429
Target Start/End: Complemental strand, 25516341 - 25516202
Alignment:
Q  291 ttctaacaacatatttgtatataa-aggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtg 389  Q
    ||||||| ||||| |||||| | | |||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25516341 ttctaactacatagttgtatctgacaggtgcatgttcagtagctggatgtgttcttaggaacctcgatgcatttgaaagtaaaccaagtaactgaatgtg 25516242  T
Q  390 tacctttcctatgcaactatgtttctctaattgactcttc 429  Q
    |||||||| |||||||  |||||| |||||||||||||||    
T  25516241 tacctttcatatgcaaacatgtttttctaattgactcttc 25516202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 428
Target Start/End: Original strand, 25540605 - 25540741
Alignment:
Q  288 tgcttctaacaacatatttgtatat-aaaggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaaccaagtaactgaat 386  Q
    |||||||||||||||| |||||||| |||||||||| ||  |||  |||||||||||||||||| |||||||||||||||||||||||||||      ||    
T  25540605 tgcttctaacaacatagttgtatatgaaaggtacatgttaggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaagt------at 25540698  T
Q  387 gtgtacctttcctatgcaactatgtt-tctctaattgactctt 428  Q
    |||||| |||| ||||||||| |||| ||| ||||||||||||    
T  25540699 gtgtacgtttcatatgcaactgtgttatctttaattgactctt 25540741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 25539539 - 25539637
Alignment:
Q  327 agtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtgtacctttcctatgcaactatgtttctctaattgact 425  Q
    |||| ||||||||||||||||||| || | |||||||| ||||| ||||||| |  || ||||||||| || ||| |||||||||||||||||||||||    
T  25539539 agtaactgaatgtgttcttaggaacctagttgcatttggaagtagaccaagttaaggattgtgtacctgtcatatacaactatgtttctctaattgact 25539637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 31418966 - 31419019
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccattatttaa 232  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  31418966 cagtggcggaaccggggggtggcaagggggagccaccgccaccccattatttaa 31419019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 21453227 - 21453181
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  21453227 cagtggcggaactggggggtggcaagggggagccaccgccaccccat 21453181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 12003377 - 12003331
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  12003377 cagtggcggaactggggggtggcaaggaggagccaccgccaccccat 12003331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 6472735 - 6472699
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccacc 215  Q
    |||||||||||||||||||||||||||||||||||||    
T  6472735 cagtggcggaactggggggtggcaagggggagccacc 6472699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 1667822 - 1667870
Alignment:
Q  178 gcagtggcggaactggggggtggcaagggggagccaccaccaccccatt 226  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1667822 gcagtggcggaactggggggtggcaagggggagccaccgccaccccatt 1667870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 16658527 - 16658575
Alignment:
Q  178 gcagtggcggaactggggggtggcaagggggagccaccaccaccccatt 226  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  16658527 gcagtggcggaactggggggtggcaagggggagacaccgccaccccatt 16658575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 33360100 - 33360152
Alignment:
Q  178 gcagtggcggaactggggggtggcaagggggagccaccaccaccccattattt 230  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||    
T  33360100 gcagtggcggaattagggggtggcaagggggagccaccgccaccccattattt 33360152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 42808382 - 42808429
Alignment:
Q  181 gtggcggaactggggggtggcaagggggagccaccaccaccccattattt 230  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  42808382 gtggcggaactggggggtggca--ggggagccaccgccaccccattattt 42808429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 32381211 - 32381243
Alignment:
Q  193 gggggtggcaagggggagccaccaccaccccat 225  Q
    ||||||||||||||||||||||| |||||||||    
T  32381211 gggggtggcaagggggagccaccgccaccccat 32381243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 32435166 - 32435198
Alignment:
Q  193 gggggtggcaagggggagccaccaccaccccat 225  Q
    ||||||||||||||||||||||| |||||||||    
T  32435166 gggggtggcaagggggagccaccgccaccccat 32435198  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 42740940 - 42740888
Alignment:
Q  173 gtggtgcagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  42740940 gtggagcagtggcggaactggggggtggcaagggggagccaccgccaccccat 42740888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 21745080 - 21745033
Alignment:
Q  178 gcagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  21745080 gcagtggcggaactggggggtggcaagggggagccaccgccaccccat 21745033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 32863333 - 32863379
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  32863333 cagtggcggaactggggggtggcaagggggagccaccgccaccccat 32863379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 3173848 - 3173895
Alignment:
Q  177 tgcagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  3173848 tgcagtggcggaactgggg-gtggcaagggggagccaccgccaccccat 3173895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 26063041 - 26063089
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccatta 227  Q
    |||||||||| | |||||||||||||||||||||||| |||||||||||    
T  26063041 cagtggcggagccggggggtggcaagggggagccaccgccaccccatta 26063089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 18740081 - 18740036
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||    
T  18740081 cagtggcggaactggggt-tggcaagggggagccaccgccaccccat 18740036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 43299937 - 43299980
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccacccc 223  Q
    |||||||||||||||||  |||||||||||||||||| |||||||    
T  43299937 cagtggcggaactggggt-tggcaagggggagccaccgccacccc 43299980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 2339226 - 2339178
Alignment:
Q  178 gcagtggcggaactggggggtggcaagggggagccaccaccaccccatt 226  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2339226 gcagtggcggaactggggggtggcaagggggagccaccgccaccccatt 2339178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 9456119 - 9456161
Alignment:
Q  180 agtggcggaactggggggtggcaagggggagccaccaccaccc 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  9456119 agtggcggaactggggggtggcaagggggagccaccgccaccc 9456161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 52893141 - 52893187
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||    
T  52893141 cagtggcggaactgggggttggcaagggggagccaccgccaccccat 52893187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 40922552 - 40922600
Alignment:
Q  183 ggcggaactggggggtggcaagggggagccaccaccaccccattattta 231  Q
    ||||||||  ||||||||||||||||||||||| |||||||||| ||||    
T  40922552 ggcggaaccagggggtggcaagggggagccaccgccaccccatttttta 40922600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 39323 - 39375
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccattattta 231  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  39323 cagtggcggaactagggggtggcaagggggagccacagccaccccattattta 39375  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 14800404 - 14800352
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccattattta 231  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  14800404 cagtggcggaactagggggtggcaagggggagccacagccaccccattattta 14800352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 33754363 - 33754312
Alignment:
Q  176 gtgcagtggcggaactggggggtggcaagggggagccaccaccaccccatta 227  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  33754363 gtgcggtggcagaactggggggtggcaagggggagccaccgccaccccatta 33754312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 21421920 - 21421970
Alignment:
Q  180 agtggcggaactggggggtggcaagggggagccaccaccaccccattattt 230  Q
    ||||||||| |  ||||||||||||||||||||||| ||||||||||||||    
T  21421920 agtggcggagccagggggtggcaagggggagccaccgccaccccattattt 21421970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 46164797 - 46164751
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    |||||||||||||||| |||||||||||||||||||| |||| ||||    
T  46164797 cagtggcggaactgggtggtggcaagggggagccaccgccactccat 46164751  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 44504331 - 44504379
Alignment:
Q  177 tgcagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    ||||| ||||||||| |||| |||||||||||||||||| |||||||||    
T  44504331 tgcaggggcggaactaggggttggcaagggggagccaccgccaccccat 44504379  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 8433416 - 8433371
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    |||||||||||| ||||| |||||||||||||||||| |||||||||    
T  8433416 cagtggcggaaccggggg-tggcaagggggagccaccgccaccccat 8433371  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 20037990 - 20038023
Alignment:
Q  194 ggggtggcaagggggagccaccaccaccccatta 227  Q
    ||||||||||||||||||||||||| ||||||||    
T  20037990 ggggtggcaagggggagccaccacctccccatta 20038023  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 54785622 - 54785574
Alignment:
Q  179 cagtggcggaactggggggtggcaaggggga--gccaccaccaccccat 225  Q
    |||||||||||||||||||||| ||||||||  |||||| |||||||||    
T  54785622 cagtggcggaactggggggtgggaagggggagcgccaccgccaccccat 54785574  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 38979032 - 38978988
Alignment:
Q  177 tgcagtggcggaactggggggtggcaagggggagccaccaccacc 221  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  38979032 tgcagtgacggaactggggggtggcaagggggagccaccaccacc 38978988  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 16497606 - 16497560
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||    
T  16497606 cagtggcggaactgcggggtggcaagggggagccaccgccaccccat 16497560  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 7170715 - 7170768
Alignment:
Q  178 gcagtggcggaactggggggtggcaagggggagccaccaccaccccattattta 231  Q
    ||||| |||||||  ||||||||||||||||||||||| |||||||||||||||    
T  7170715 gcagttgcggaaccagggggtggcaagggggagccaccgccaccccattattta 7170768  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 14125143 - 14125098
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    |||||||||||||||||| |||||||||||||||||| | |||||||    
T  14125143 cagtggcggaactggggg-tggcaagggggagccaccgctaccccat 14125098  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 26014217 - 26014261
Alignment:
Q  181 gtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  26014217 gtggcggaattggggggtggcaagggggagccaccgccaccccat 26014261  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 18994673 - 18994625
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccatta 227  Q
    |||||||||| |  ||||||||||||||||||||||| |||||||||||    
T  18994673 cagtggcggagccagggggtggcaagggggagccaccgccaccccatta 18994625  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 26354696 - 26354741
Alignment:
Q  179 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||    
T  26354696 cagtggcggaactggagg-tggcaagggggagccaccgccaccccat 26354741  T

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Target: scaffold1160 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 2168 - 2211
Alignment:
Q  182 tggcggaactggggggtggcaagggggagccaccaccaccccat 225  Q
    |||||||||| |||||||| |||||||||||||| |||||||||    
T  2168 tggcggaactagggggtggtaagggggagccaccgccaccccat 2211  T

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