View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18338_low_1 (Length: 681)
Name: NF18338_low_1
Description: NF18338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18338_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 378 - 592
Target Start/End: Complemental strand, 13642820 - 13642606
Alignment:
| Q |
378 |
atgttttcaagccataaaattgtaaaccatcaagaattgttaaaaagtttgtcaactataaaattgctactcaattgctcaccgaaaacacagataatga |
477 |
Q |
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| T |
13642820 |
atgttttcaagccataaaattgtaaaccatcaagaattgttaaaaagtttgtcaactataaaattgctactcaattgctcaccgaaaacacagataatga |
13642721 |
T |
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| Q |
478 |
tcgtcttaattgagacaatttgggtagcggtgcaaaaactgtaaatcataaaatagtttcttataatgtttacttgggtcatcctttacctcgtttaatt |
577 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13642720 |
tcgtcttaattgagacaatttgggtagcaatgcaaaaattgtaaatcataaaatagtttcttataatgtttacttgggtcatcctttacctcgtttaatt |
13642621 |
T |
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| Q |
578 |
ggattatattcaatt |
592 |
Q |
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||||||||||||||| |
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| T |
13642620 |
ggattatattcaatt |
13642606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 56 - 219
Target Start/End: Complemental strand, 13646403 - 13646240
Alignment:
| Q |
56 |
acattctacatttaagttttaagtatatatatgtagtatgttatgtttgaagaggaacaagaggctatgttttgttattaatatttatagtgacacatta |
155 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |
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| T |
13646403 |
acattctacatttatgttttatgtatatatatgtagtatgttatgtttgaagaggaataagaggctatgttttgttattaatatttatagtcacgcatta |
13646304 |
T |
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| Q |
156 |
ggtttaaggtgaatgttagtcgaagaagatgacaaaatgtaaggcttgaatttgcaggctgggg |
219 |
Q |
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| T |
13646303 |
ggtttaaggtcaatgttagttgaagaagatggcaaaatgtaaggcttgaatttgcaggctgggg |
13646240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 167 - 375
Target Start/End: Complemental strand, 13643447 - 13643229
Alignment:
| Q |
167 |
aatgttagtcgaagaagatgacaaaatgtaaggcttgaatttgcaggctgggggcagaggtgtgctagctgcattgtgtgtaatgtttggaccacnnnnn |
266 |
Q |
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| T |
13643447 |
aatgttagttgaggaagatgacaaaatgtaaggcttgaatttgcaggctgggggcagaggagtgctagctgcactgtgtgtaatgtttggaccacaaaaa |
13643348 |
T |
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| Q |
267 |
nnccgnnnnnnnnnnnnctttggcatttgtgtaaaattgatga----------aatagagattgaatgaaaaatgtgatctgttgtggacaatggtccat |
356 |
Q |
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| T |
13643347 |
aaccgtttttgttttttctttggcatttgtgtaaaattgatgaaagagtgtataaaagagattgaatgaaaaatgtgatatgttgtggacaatggttcat |
13643248 |
T |
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| Q |
357 |
tttagcaaacatcataatt |
375 |
Q |
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| T |
13643247 |
tttagcaaacatcataatt |
13643229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 13643565 - 13643451
Alignment:
| Q |
25 |
gatgattcatgcatggagtgaggaatacaccacattctacatttaagttttaagtatatatatgtagtatgttatgtttgaagaggaacaagaggctatg |
124 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13643565 |
gatgattcatgcatggagtgaggaatactctacattctacatttaagttttatgtatatatatgtagtatgttatgtttgaagaggaacaagaggctatg |
13643466 |
T |
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| Q |
125 |
ttttgttattaatat |
139 |
Q |
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||||||| ||||||| |
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| T |
13643465 |
ttttgttgttaatat |
13643451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 136 - 261
Target Start/End: Complemental strand, 13638828 - 13638707
Alignment:
| Q |
136 |
atatttatagtgacacattaggtttaaggtgaatgttagtcgaagaagatgacaaaatgtaaggcttgaatttgcaggctgggggcagaggtgtgctagc |
235 |
Q |
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||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| || || |
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| T |
13638828 |
atatttatagtcacgcattaggtttaaggtgaatgttagttgaggaagatgacaaaatgtaaggcttgaatttgcaggctgagggcagagacgt----gc |
13638733 |
T |
|
| Q |
236 |
tgcattgtgtgtaatgtttggaccac |
261 |
Q |
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|||| |||||||||||||| |||||| |
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| T |
13638732 |
tgcactgtgtgtaatgtttagaccac |
13638707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 615 - 679
Target Start/End: Complemental strand, 13642519 - 13642455
Alignment:
| Q |
615 |
tatgtaattatttttcacatcgaaataggctccatcttcatacccaatctagaatattatgattc |
679 |
Q |
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| T |
13642519 |
tatgtaattatttttcacatcgaaataggctccatcttcatacccaatctagaatattatgattc |
13642455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 13646143 - 13646093
Alignment:
| Q |
310 |
aatagagattgaatgaaaaatgtgatctgttgtggacaatggtccatttta |
360 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13646143 |
aatagatattgaatgaaaaatgtgatctggtgtggacaatggtccatttta |
13646093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 13646504 - 13646460
Alignment:
| Q |
3 |
ttttgggtttattgaagttgatgatgattcatgcatggagtgagg |
47 |
Q |
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| T |
13646504 |
ttttggggttattgatgttgatgatgattcatgcatggggtgagg |
13646460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 13638642 - 13638597
Alignment:
| Q |
317 |
attgaatgaaaaatgtgatctgttgtg-gacaatggtccattttag |
361 |
Q |
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| T |
13638642 |
attgaatgaaaaatgtgatatgttgtgacacaatggtccattttag |
13638597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 31910387 - 31910338
Alignment:
| Q |
314 |
gagattgaatgaaaaatgtgatctgttgtggacaatggtccattttagca |
363 |
Q |
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|||||||||||||||||||||||||||| |||| | |||||||||||||| |
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| T |
31910387 |
gagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagca |
31910338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 31903049 - 31903004
Alignment:
| Q |
316 |
gattgaatgaaaaatgtgatctgttgtggacaatggtccattttag |
361 |
Q |
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||||||||||| |||| |||||||||||||| |||||||||||||| |
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| T |
31903049 |
gattgaatgaataatgcgatctgttgtggaccatggtccattttag |
31903004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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