View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18338_low_12 (Length: 257)
Name: NF18338_low_12
Description: NF18338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18338_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 7520176 - 7520056
Alignment:
| Q |
125 |
taattaattaaagtagcgctaacttatgttagttttcacttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7520176 |
taattaattaaagtagcgctaacttatgttagttttcatttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
7520077 |
T |
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| Q |
225 |
tctctctttctccctgcccta |
245 |
Q |
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||||||||||||||||||||| |
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| T |
7520076 |
tctctctttctccctgcccta |
7520056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 47688539 - 47688419
Alignment:
| Q |
125 |
taattaattaaagtagcgctaacttatgttagttttcacttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47688539 |
taattaattaaagtagcgctaacttatgttagttttcatttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
47688440 |
T |
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| Q |
225 |
tctctctttctccctgcccta |
245 |
Q |
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||||||||||||||||||||| |
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| T |
47688439 |
tctctctttctccctgcccta |
47688419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47688867 - 47688769
Alignment:
| Q |
1 |
aaaaggaaaacatatttgccactcattacatgaggaaaataaatgagaccaataaaaataattggaataaaactaaacttacatatctaacagtccatc |
99 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47688867 |
aaaaggaaaatatatttgccactcattacatgaggaaaataaatgagaccaataaaaataattggaataaaactaaacttacatatctaacagtccatc |
47688769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 37417010 - 37416961
Alignment:
| Q |
193 |
aagaaatacattaagtttaaagtgttttcttttctctctttctccctgcc |
242 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
37417010 |
aagaaatacattaagcttaaagtgttttcttttctctctttgtccctgcc |
37416961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 37417366 - 37417290
Alignment:
| Q |
12 |
atatttgccactcattacatgaggaaaataaatgagaccaataaaaataattggaataaaactaaacttacatatctaa |
90 |
Q |
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||||||| ||||| ||||||||| ||| ||| |||| ||| |||| ||||||||||| ||||||||||||||||||| |
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| T |
37417366 |
atatttgtcactccttacatgag--aaagaaacgagagcaaaaaaataaattggaataatactaaacttacatatctaa |
37417290 |
T |
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