View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18338_low_16 (Length: 225)
Name: NF18338_low_16
Description: NF18338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18338_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 39772839 - 39773031
Alignment:
| Q |
20 |
ttttgcttcaatttctagattaagaaagtagcatgcatattcacacaaaaaattagaattcaccaattccttgtccgcacatatatgttataaatcgtaa |
119 |
Q |
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| T |
39772839 |
ttttgcttcaatttctagattaagaaagtagcatgcatattcacacaaaaaattagaattcaccaattccttgtccgcacatatatgttataaatcgtaa |
39772938 |
T |
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| Q |
120 |
tccatgctcgaaagaattaggctaatacaattatt-aagcttataacatnnnnnnnnnnnnntgttgtcctaacctttaattgcaggttattg |
211 |
Q |
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| T |
39772939 |
tccatgctcgaaagaattaggctaatacaattattaaagcttataacataaaaacaaaaaaatgttgtcctaacctttaattgcaggttattg |
39773031 |
T |
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