View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18338_low_2 (Length: 523)
Name: NF18338_low_2
Description: NF18338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18338_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 22 - 514
Target Start/End: Complemental strand, 28666098 - 28665606
Alignment:
| Q |
22 |
caactgttaacaaccattgaacatgttcaattaatgtatgactttttgtaggtagttgaggatgatacattcccagatggaacaatactnnnnnnnggta |
121 |
Q |
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| T |
28666098 |
caactgttaacaaccattgaacatgttcaattaatgtatgactttttgtaggtagttgaggatgatacattcccagatggaacaatactaaaaaaaggta |
28665999 |
T |
|
| Q |
122 |
caaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaaaagatggtcg |
221 |
Q |
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| T |
28665998 |
caaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaagactgcagagagtttaaacctgaaagatggttaaaagatggtcg |
28665899 |
T |
|
| Q |
222 |
ttttatgagtgaatctgcgtacaaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgct |
321 |
Q |
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| T |
28665898 |
ttttatgagtgaatctgcgtacaaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgct |
28665799 |
T |
|
| Q |
322 |
gctagtatcatatacagataccatgtgaaggtggtggagaatcaccctgtggaaccaaagattgctttaactatgtatatgaagcatggaatcaaagtta |
421 |
Q |
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| T |
28665798 |
gctagtatcatatacagataccatgtgaaggtggtggagaatcaccctgtggaaccaaagattgctttaactatgtatatgaagcatggaatcaaagtta |
28665699 |
T |
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| Q |
422 |
atctctataggagagatgctgctgaaattcaaaaacacttgatttgatcattggttaaatatcaattgataattacgctaatggctgatgatg |
514 |
Q |
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| T |
28665698 |
atctctataggagagatgctgctgaaattcaaaaacacttgatttgatcattggttaaatatcaattgataattatgctgatggctgatgatg |
28665606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 82 - 367
Target Start/End: Original strand, 13888641 - 13888929
Alignment:
| Q |
82 |
gatgatacattcccagatggaacaatactnnnnnnnggtacaaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaagact |
181 |
Q |
| |
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||||| ||||| ||||||||||||| ||| || |||||| | || |||||||| ||| ||||||| |||||||||||||||||||||||||| | |
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| T |
13888641 |
gatgacacatttccagatggaacaaaactaaaaaaaggaacaaaaattatatatgcaatatattcaatgggaagaatggaaagcatatggggaaaagatt |
13888740 |
T |
|
| Q |
182 |
gcagggagtttaaacctgaaagatggttaa---aagatggtcgttttatgagtgaatctgcgtacaaattcactgcatttaatggcggacctcggttatg |
278 |
Q |
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| T |
13888741 |
gcttggagttcaagccagaaagatggttaactaaagatggtcatttcatcggtgaatctgcgtacaaattcactgctttcaatggaggaccgaggttgtg |
13888840 |
T |
|
| Q |
279 |
tttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatatacagataccatgtgaaggtggtggagaatcacc |
367 |
Q |
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| T |
13888841 |
tttaggcaaagattttgcatactatcaaatgaaatatgtcgcagctagcatcatatttcgttaccatgttaaggttgttgagaatcacc |
13888929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 334
Target Start/End: Complemental strand, 13896024 - 13895808
Alignment:
| Q |
121 |
acaaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaa---aagatg |
217 |
Q |
| |
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|||||||| || |||||||| ||| ||||||| |||||||||| ||||||||||||||| ||| |||||| || || ||||||||||||| |||||| |
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| T |
13896024 |
acaaaagttatatatgcaatatattcaatgggaagaatggaaaacatatggggaaaagattgcttggagttcaagccagaaagatggttaaccgaagatg |
13895925 |
T |
|
| Q |
218 |
gtcgttttatgagtgaatctgcgtacaaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgt |
317 |
Q |
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||| ||| ||||| |||||||| ||||||||||| || |||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13895924 |
gtcatttcatgagcgaatctgcctacaaattcacagcttttaatggaggaccaaggttgtgtttaggcaaagattttgcatactatcaaatgaaatatgt |
13895825 |
T |
|
| Q |
318 |
tgctgctagtatcatat |
334 |
Q |
| |
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||| |||| ||||||| |
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| T |
13895824 |
tgcagctaacatcatat |
13895808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 371
Target Start/End: Original strand, 13891748 - 13891842
Alignment:
| Q |
277 |
tgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatatacagataccatgtgaaggtggtggagaatcaccctgt |
371 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||| | |||||||| ||||| || ||||| |||||||| |
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| T |
13891748 |
tgtttaggcaaaggttttgcatactatcaaatgaaatatgttgcagctaccatcatatttcgttaccatgttaaggttgttgagaagcaccctgt |
13891842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 334
Target Start/End: Complemental strand, 13893030 - 13892814
Alignment:
| Q |
121 |
acaaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaa---aagatg |
217 |
Q |
| |
|
||||||||||| |||||||||| | | ||||| ||||||||||| ||| || ||||||| ||| |||||| || || ||| || |||||| ||||| |
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| T |
13893030 |
acaaaagtgatatatgcaattttttccatgggaagaatggaaagtatacggagaaaagattgctcggagttcaagccagaacgaaggttaactaaagata |
13892931 |
T |
|
| Q |
218 |
gtcgttttatgagtgaatctgcgtacaaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgt |
317 |
Q |
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||| ||||| ||| || |||||||||||| |||||||| ||| | |||| |||||||| |||||||||||||| ||||||| ||||||||| |
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| T |
13892930 |
tctatttcatgagcgaagcttactacaaattcactatttttaatggaggatcgaggttgtgtttaggtaaagattttgcatactatcaaacgaaatatgt |
13892831 |
T |
|
| Q |
318 |
tgctgctagtatcatat |
334 |
Q |
| |
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||| ||||| ||||||| |
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| T |
13892830 |
tgcagctagcatcatat |
13892814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 13890729 - 13890655
Alignment:
| Q |
241 |
tacaaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatat |
315 |
Q |
| |
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||||| |||||||| |||||||| ||| |||| || |||||||||||||||||||| ||||||||||||||| |
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| T |
13890729 |
tacaatttcactgcttttaatggaagacaaaggttgtgcttaggcaaagattttgcatactatcaaatgaaatat |
13890655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 371
Target Start/End: Original strand, 13893314 - 13893413
Alignment:
| Q |
272 |
ggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatatacagataccatgtgaaggtggtggagaatcaccctgt |
371 |
Q |
| |
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|||| ||||||| ||||||||||||||| |||||||||||||||||| |||| ||||||| | |||| ||| ||| | || |||||||||||||| |
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| T |
13893314 |
ggttgtgtttagccaaagattttgcatacattcaaatgaaatatgttgcaactagcatcatatttcgttaccgtgttaagattgttgagaatcaccctgt |
13893413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 13893159 - 13893215
Alignment:
| Q |
121 |
acaaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaa |
177 |
Q |
| |
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||||||||||| ||||||||||| |||||| |||||||||| |||||||||||| |
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| T |
13893159 |
acaaaagtgatacatgcaatttatttaatgggaagaatggaaaatatatggggaaaa |
13893215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 121 - 369
Target Start/End: Complemental strand, 1034016 - 1033765
Alignment:
| Q |
121 |
acaaaagtgatctatgcaatttatgcaatggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaa---aagatg |
217 |
Q |
| |
|
||||||||||| |||||||||||| | ||||| |||||||||| ||||| |||||||| ||| |||||| || || ||||||||||||| |||||| |
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|
| T |
1034016 |
acaaaagtgatatatgcaatttattccatgggaagaatggaaaatatatgaggaaaagattgcttggagttcaagccagaaagatggttaactaaagatg |
1033917 |
T |
|
| Q |
218 |
gtcgttttatgagtgaatctgcgtacaaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgt |
317 |
Q |
| |
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||| ||| ||||| | || ||| |||||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1033916 |
gtcatttcatgagcgtatttgcctacaaatttactgcttttaatggaggaccaaggttgtgtttaggcaaagattttgcatactatcaaatgaaatatgt |
1033817 |
T |
|
| Q |
318 |
tgctgctagtatcatatacagataccatgtgaaggtggtggagaatcaccct |
369 |
Q |
| |
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||| ||||| ||||||| | |||||||| ||||| || |||||||||||| |
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|
| T |
1033816 |
tgcagctagcatcatatttggttaccatgttaaggttgttgagaatcaccct |
1033765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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