View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18338_low_4 (Length: 397)
Name: NF18338_low_4
Description: NF18338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18338_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 376
Target Start/End: Complemental strand, 32691247 - 32690878
Alignment:
| Q |
8 |
agagatgaagtataagcagtacacaagccacctgaacaaaagaaaaaacactcaactagatgatgacctcaaagacaaacttatttcctaaggatatagt |
107 |
Q |
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| T |
32691247 |
agagatgaagtataagcagtacacaagccacctgaacaaaagaaaaaacactcaactagatgatgacctcaaagacaaacttatttcctaaggatatagt |
32691148 |
T |
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| Q |
108 |
gtaacgtgtttacacaccattcataaaataaacatgaagttgatatttgcaatgaaatccatacaattgttccatatgtttatgatcttccaagggacca |
207 |
Q |
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| T |
32691147 |
gtaacgtgtttacacaccattcataaaataaacatgaagttgatatttgcaatgaaatccatacaattgttccatatgtttatgatcttccaagggacca |
32691048 |
T |
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| Q |
208 |
aggaagcagacttgaatgctaagactgcaagcttttaaaaactttccagccataaatgagtgtagttcctgtgtttggaaacttttaaagatctcattac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
32691047 |
aggaagcagacttgaatgctaagactgcaagcttttaaaaaatttccagccataaatgagtgtagttcctgtgtttagcaacttttaaagatctcattac |
32690948 |
T |
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| Q |
308 |
accagaaatttcagcaactaaagagttccccattcctagtcaac-aaaaaagtacaatgtcagatcatag |
376 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |
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| T |
32690947 |
accagaaatttcagcaactaaagagttccccatacctagtcaccaaaaaaagtacaatgtcagatcatag |
32690878 |
T |
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