View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18338_low_9 (Length: 291)
Name: NF18338_low_9
Description: NF18338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18338_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 3682230 - 3681966
Alignment:
| Q |
11 |
caaaggataagaggaaagaccgtaaaggtggtgttgaaggggtggctagtaggaaggaagatggtgcaaaggttataccggagtcctcaaattctttgaa |
110 |
Q |
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| T |
3682230 |
caaagaataagaggaaagaccgtaaagttggtgttgaaggggtggctagtaggaaggaagatggtgcaaaggttataccggagtcctcaaattctttgaa |
3682131 |
T |
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| Q |
111 |
ccaagtaaccttgcaagaagcgctagatgcggaaaggattcttagagttaaaaagaaaaatggactgactttttcggtgttggatggtccaattttggat |
210 |
Q |
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| T |
3682130 |
ccaagtaaccttgcaagaagcgctagatgcggaaaggattcttagagttaaaaagaaaaatggagtgactttttcggtgctggatggtcccattttggat |
3682031 |
T |
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| Q |
211 |
agacttgttgttttagagaaagtggatgttaagtaaaatgtgcatttggagccattagaggttga |
275 |
Q |
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| T |
3682030 |
agacttgttgttttagagaaagtggatgttaagcaaaatgtgcatttggagccattagaggttga |
3681966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 57 - 275
Target Start/End: Original strand, 6228348 - 6228566
Alignment:
| Q |
57 |
tagtaggaaggaagatggtgcaaaggttataccggagtcctcaaattctttgaaccaagtaaccttgcaagaagcgctagatgcggaaaggattcttaga |
156 |
Q |
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| T |
6228348 |
tagtaggaaggtggaagctgcaaagactgtaccggagtcctcaaattctttgaatcaagttactctgcaagaagctctagatgcggaaaggattcttaga |
6228447 |
T |
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| Q |
157 |
gttaaaaagaaaaatggactgactttttcggtgttggatggtccaattttggatagacttgttgttttagagaaagtggatgttaagtaaaatgtgcatt |
256 |
Q |
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| T |
6228448 |
gttaaaaagaaaaatggtgtgacgtttgcggtgccggatggtccaattttggataaacttgtggaacttgagaaagtggatgtgaagaagagtgtgcatt |
6228547 |
T |
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| Q |
257 |
tggagccattagaggttga |
275 |
Q |
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| T |
6228548 |
tggagattttagaggttga |
6228566 |
T |
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