View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_high_13 (Length: 504)
Name: NF18339_high_13
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 95 - 486
Target Start/End: Complemental strand, 36329860 - 36329468
Alignment:
| Q |
95 |
aaatgaatgaagaaattagtttgttattatattaattttagtgtagttttcagtctctgttaggttattatctatgttacatgtataaaataaactacca |
194 |
Q |
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| T |
36329860 |
aaatgaatgaagaaattagtttgttattataataattttagtgtagtttttagtctctttta---tattat------------tataaaataaactacca |
36329776 |
T |
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| Q |
195 |
tttatatcttcatcaatttagtat--------------tttttgcactgttattgtttgtg--actccaacgcaacgttcttctgacgatagcaaactag |
278 |
Q |
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| T |
36329775 |
tttatatcttcatcaatttagtttcttttttttttttttttttgcattgtgattgtttgtgtgactccaccg-----ttcttctgacgatagcaaactag |
36329681 |
T |
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| Q |
279 |
atattgggtgcatggaagatccatcaaaatttgctttcagatcaataatttttgtcacgataggataactctcttcttctattattcctaacaatttaga |
378 |
Q |
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| T |
36329680 |
atattgggtgcatggaagatccatcaaaatttgctttcagatcaataatttttgtcatgatagaataactctcttcttctattattcctaacaatttaaa |
36329581 |
T |
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| Q |
379 |
attagttttttcttaatatcccaatagggtgcactactctattaatatatcatttaggattaacaaaaaca-----aatagaacatgtaggaatgaataa |
473 |
Q |
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| T |
36329580 |
tttagttttttgttaatatcgcaatagggtgcactactctattaatatatcatttaggattaacaaaaacatattttatagaacatgtaggaatgaataa |
36329481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 36351618 - 36351505
Alignment:
| Q |
312 |
ctttcagatcaataatttttgtcacgataggataactctcttcttctattattcctaacaatttagaattagttttttcttaatatcccaatagggtgca |
411 |
Q |
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| T |
36351618 |
ctttcagatcaataatttttgacacgatagtataactctcttcttctattattcctaataatttaaaattagttttctcttaatatctcgatagggtgca |
36351519 |
T |
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| Q |
412 |
ctactctattaata |
425 |
Q |
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| T |
36351518 |
ctactctattaata |
36351505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36321980 - 36321909
Alignment:
| Q |
11 |
cacagaaaccgtgtactgaccttattgctaaatcaagcaaataaactattgtaggaacatatacaaatcaag |
82 |
Q |
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| T |
36321980 |
cacagaaaccgtgtactgaccttattgcaaaatcaagcaaataaactattgtaggaacatatacaaatcaag |
36321909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36327165 - 36327094
Alignment:
| Q |
11 |
cacagaaaccgtgtactgaccttattgctaaatcaagcaaataaactattgtaggaacatatacaaatcaag |
82 |
Q |
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| T |
36327165 |
cacagaaaccatgtactgaccttattgcaaaatcaagcaaataaactattgtaggaacatatacaaatcaag |
36327094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36304865 - 36304794
Alignment:
| Q |
11 |
cacagaaaccgtgtactgaccttattgctaaatcaagcaaataaactattgtaggaacatatacaaatcaag |
82 |
Q |
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| T |
36304865 |
cacagaaaccgtggactggccttattgcaaaatcaagcaaataaactattgtaggaacatatacaaatcaag |
36304794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 36351661 - 36351620
Alignment:
| Q |
181 |
aaaataaactaccatttatatcttcatcaatttagtattttt |
222 |
Q |
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| T |
36351661 |
aaaataaactaccgtttatgtcttcatcaatttagttttttt |
36351620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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