View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18339_high_16 (Length: 494)
Name: NF18339_high_16
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Complemental strand, 35522450 - 35521995
Alignment:
| Q |
13 |
taggcttgctttgttgtcagtttgtagtcgtggttctagactagacatgcatatgttccaatcataatatgtgcatttttccactcgtgcactacttctg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35522450 |
taggcttgctttgttgtcagtttgtagtcgtggttctagac-----atgcatatgttccaatcataatatgtacatttttccactcgtgcactacttctg |
35522356 |
T |
|
| Q |
113 |
atagctgtatttacattaataaaatttctttgccttttaagaagataaaaacctttcaattaatatacatttttcttcaataaaccttttatttaagtgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35522355 |
atagctgtatttacattaataaaatttctttgccttttaataagataaaaacctttgaattaatatacatttttcttcaataaaccttttatttaagtgg |
35522256 |
T |
|
| Q |
213 |
aacaaattcttcttataaaaggtactttgagaacacacttattatttttatagatcaagcaaagtattaacaatcaactaaattttatattatgtttgag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35522255 |
aacaaattcttcttataaaaggtactttgagaacacacttattatttttatagatcaagcaaagtattaacaatcaactaaattttatattatgtttgag |
35522156 |
T |
|
| Q |
313 |
gttagtttagtttttctttctttctttcttataatc-aatacatcagattgatttgtttcttactttatgcttgcgccacaagagttgttatacttaata |
411 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35522155 |
gttagtttagtttttctttctt----tcttataatcaaatacatcagattgatttgtttcttactttatgcttgcgccacaagagttgttatacttaata |
35522060 |
T |
|
| Q |
412 |
acaaaaggtacatcaattgatccaacccataatactccatctctttcctcaacctcactaataga |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35522059 |
acaaaaggtacatcaattgatccaacccataatactccatctctttcctcaacctcactaataga |
35521995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 288 - 476
Target Start/End: Complemental strand, 35525761 - 35525573
Alignment:
| Q |
288 |
aactaaattttatattatgtttgaggttagtttagtttttctttctttctttcttataatcaatacatcagattgatttgtttcttactttatgcttgcg |
387 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||| ||| ||| | |||||||||||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
35525761 |
aactaaattttataacatgtacgaggttagtttttttttttttttttttgtgcttataatcaatgcttgagattgatttgtttcttactttatgcttgcg |
35525662 |
T |
|
| Q |
388 |
ccacaagagttgttatacttaataacaaaaggtacatcaattgatccaacccataatactccatctctttcctcaacctcactaataga |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35525661 |
ccacaagagttgttatacttaataacaaaaggtgcatcaagtgatccaacccataatactccatctctttcctcaacctcagtaataga |
35525573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University