View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_high_17 (Length: 474)
Name: NF18339_high_17
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_high_17 |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Complemental strand, 3856848 - 3856387
Alignment:
| Q |
17 |
tatataacagaaacaaacgcaggggcattgatagaacacataaacattgttcataa----taagatgaagtaacagtttgataaacctaaggaaataaac |
112 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3856848 |
tatataacagaaacaaacgcaggggcatcgatagaacacataaacattgttcataaataataagatgaagtaacagtttgataaacctaaggaaataaac |
3856749 |
T |
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| Q |
113 |
catatagcagacacacttgaggtcagaccaccaatccaaaacggagaaatacaaattacaccgagaaatccagaaacagcaccaatgcaggtttatcaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856748 |
catatagcagacacacttgaggtcagaccaccaatccaaaacggagaaatacaaattacaccgagaaatccagaaacagcaccaatgcaggtttatcaaa |
3856649 |
T |
|
| Q |
213 |
cgtaaagttggccatgagtaaatactggccttggcaaataaagtccaacagaggttaaagtttgcccttggctcttgtttatggtcatagaaaatgaaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3856648 |
cgtaaagttggccatgagtaaatactggccttggcaaataaagtccaacagaggttaaagtttgcccttggctcttgtttatggtcatagcaaatgaaag |
3856549 |
T |
|
| Q |
313 |
aaccagtggaaactgacgcctctcaaacgtaatggaaacattagcaccagaagggatcagattcatccgaggaatgtagacaacctcaccagcatgtgca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856548 |
aaccagtggaaactgacgcctctcaaacgtaatggaaacattagcaccagaagggatcagattcatccgaggaatgtagacaacctcaccagcatgtgca |
3856449 |
T |
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| Q |
413 |
ccaccaataacacgtgcacaaatcacatttttccccaaagagacaataatcaaacgcgttcc |
474 |
Q |
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| T |
3856448 |
ccaccaataacacgtgcacaaatcacatttttccccaaagagacaataatcaaacgcgttcc |
3856387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 18046601 - 18046468
Alignment:
| Q |
268 |
taaagtttgcccttggctcttgtttatggtcatagaaaatgaaagaaccagtggaaactgacgcctctcaaacgtaatggaaacattagcaccagaaggg |
367 |
Q |
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||||||||| || || || || ||||||||||| | ||| || ||||||| ||||||||| |||||||| || |||| || ||||| |||| ||| || |
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| T |
18046601 |
taaagtttggccctgacttttatttatggtcatcgcaaaagagagaaccaatggaaactgccgcctctcgaaggtaacagagacatttgcacaagatgga |
18046502 |
T |
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| Q |
368 |
atcagattcatccgaggaatgtagacaacctcac |
401 |
Q |
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| T |
18046501 |
ataagattcatccgaggtatgtaaacaacctcac |
18046468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 211 - 474
Target Start/End: Complemental strand, 46471682 - 46471419
Alignment:
| Q |
211 |
aacgtaaagttggccatgagtaaatactggccttggcaaataaagtccaacagaggttaaagtttgcccttggctcttgtttatggtcatagaaaatgaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
46471682 |
aacgtaaagttggccatgagtaaatactggccttggcaaataaagtccaacagaggttaaagtttgaccttggctcttgtttatggtcatagcaaatgaa |
46471583 |
T |
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| Q |
311 |
agaaccagtggaaactgacgcctctcaaacgtaatggaaacattagcaccagaagggatcagattcatccgaggaatgtagacaacctcaccagcatgtg |
410 |
Q |
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| T |
46471582 |
agaaccaatggaaactgacacctctcaaaagtaatggaaacattagcaccagaaggaatcagattcatccgaggaatgtaggaaacctcaccagcatgtg |
46471483 |
T |
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| Q |
411 |
caccaccaataacacgtgcacaaatcacatttttccccaaagagacaataatcaaacgcgttcc |
474 |
Q |
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| T |
46471482 |
taccaccaataacacgtgcacaaatcacatttttccccaaggagacaataatcaaacgtgttcc |
46471419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 46472135 - 46471950
Alignment:
| Q |
17 |
tatataacagaaacaaacgcaggggcattgatagaacacataaacattgttcataataagatgaagtaacagtttgataaacctaaggaaataaaccata |
116 |
Q |
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|||||||| ||| |||||||||||||| |||||||||||||||| || |||||||||||||||| |||| || ||||||||||||||||||||||||| |
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| T |
46472135 |
tatataactaaaagaaacgcaggggcatctatagaacacataaacaatggtcataataagatgaagcaacatttggataaacctaaggaaataaaccata |
46472036 |
T |
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| Q |
117 |
tagcagacacacttgaggtcagaccaccaatccaaaacggagaaatacaaattacaccgagaaatccagaaacagcaccaatgcag |
202 |
Q |
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| T |
46472035 |
tagcagacacacttcaggtcagaccacagatccaaaacggagaaatacaaattacaccaagaaatccagaaacagcatcaatgcag |
46471950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 450
Target Start/End: Complemental strand, 33446335 - 33446220
Alignment:
| Q |
335 |
tcaaacgtaatggaaacattagcaccagaagggatcagattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaa |
434 |
Q |
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||||| ||||| || ||||| |||||||| || || |||||||||||||| |||||| |||| || ||| |||| ||||||||||| ||| ||||| | |
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| T |
33446335 |
tcaaatgtaatagacacattggcaccagatggtatgagattcatccgaggtatgtaggcaacttcgccatcatgcaaaccaccaataatacgcgcacata |
33446236 |
T |
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| Q |
435 |
tcacatttttccccaa |
450 |
Q |
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| T |
33446235 |
tgacatttttgcccaa |
33446220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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