View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_high_20 (Length: 443)

Name: NF18339_high_20
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_high_20
NF18339_high_20
[»] chr5 (7 HSPs)
chr5 (275-423)||(3643564-3643713)
chr5 (271-423)||(1716486-1716638)
chr5 (197-273)||(3643319-3643395)
chr5 (355-422)||(7524973-7525040)
chr5 (355-423)||(4103250-4103318)
chr5 (383-423)||(5350672-5350712)
chr5 (357-421)||(19261152-19261216)
[»] chr6 (4 HSPs)
chr6 (345-424)||(30521237-30521316)
chr6 (355-422)||(10791687-10791754)
chr6 (355-422)||(10795925-10795992)
chr6 (364-423)||(8875703-8875762)
[»] chr1 (19 HSPs)
chr1 (270-424)||(14669742-14669897)
chr1 (310-424)||(14716251-14716365)
chr1 (355-424)||(14652530-14652599)
chr1 (355-424)||(14654373-14654442)
chr1 (355-424)||(14662321-14662390)
chr1 (355-424)||(14664164-14664233)
chr1 (355-424)||(14674486-14674555)
chr1 (355-424)||(14676637-14676706)
chr1 (355-424)||(14679864-14679933)
chr1 (355-424)||(14681604-14681673)
chr1 (355-424)||(14683755-14683824)
chr1 (355-424)||(14706093-14706162)
chr1 (355-424)||(14708583-14708652)
chr1 (355-423)||(33988075-33988143)
chr1 (355-422)||(28366234-28366301)
chr1 (355-422)||(38175565-38175632)
chr1 (355-424)||(14667144-14667213)
chr1 (356-423)||(37422175-37422242)
chr1 (355-423)||(11872515-11872583)
[»] chr8 (12 HSPs)
chr8 (317-423)||(44878950-44879056)
chr8 (317-423)||(44880865-44880971)
chr8 (355-423)||(37679760-37679828)
chr8 (355-423)||(40054317-40054385)
chr8 (355-423)||(41841186-41841254)
chr8 (357-423)||(37682064-37682130)
chr8 (355-424)||(10944432-10944501)
chr8 (367-421)||(44582870-44582924)
chr8 (366-423)||(42555117-42555174)
chr8 (366-423)||(42220880-42220936)
chr8 (133-161)||(44878636-44878664)
chr8 (133-161)||(44881257-44881285)
[»] chr4 (10 HSPs)
chr4 (355-424)||(26984700-26984769)
chr4 (355-424)||(26998773-26998842)
chr4 (355-423)||(11652426-11652494)
chr4 (355-423)||(49106563-49106631)
chr4 (355-422)||(3461177-3461244)
chr4 (355-422)||(49108668-49108735)
chr4 (355-422)||(50077234-50077301)
chr4 (378-423)||(21503706-21503751)
chr4 (355-424)||(48205836-48205905)
chr4 (353-391)||(34481155-34481193)
[»] chr2 (19 HSPs)
chr2 (355-424)||(30733993-30734062)
chr2 (355-424)||(32918085-32918154)
chr2 (355-423)||(2841051-2841119)
chr2 (355-423)||(43850054-43850122)
chr2 (270-424)||(30731927-30732082)
chr2 (318-423)||(9032021-9032126)
chr2 (318-417)||(8973280-8973379)
chr2 (318-417)||(9026754-9026853)
chr2 (355-417)||(9008026-9008088)
chr2 (318-423)||(9020815-9020920)
chr2 (318-417)||(8979290-8979389)
chr2 (318-417)||(9023415-9023514)
chr2 (357-427)||(10763908-10763978)
chr2 (355-422)||(19232435-19232501)
chr2 (353-417)||(8992151-8992215)
chr2 (355-423)||(35701894-35701962)
chr2 (355-417)||(8984698-8984760)
chr2 (364-412)||(9030412-9030460)
chr2 (364-417)||(8988469-8988522)
[»] chr3 (1 HSPs)
chr3 (355-392)||(15758568-15758605)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 423
Target Start/End: Original strand, 3643564 - 3643713
Alignment:
Q  275 agtcccacatcgaggagttaagagagaaagtgagtg-atgtgtgatataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggc 373  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||     | |  || || | |||||||| ||||||||||    
T  3643564 agtcccacatcgaggagttatgagagaaagtgagtggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggc 3643663  T
Q  374 tgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    | ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  3643664 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 3643713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 423
Target Start/End: Complemental strand, 1716638 - 1716486
Alignment:
Q  271 aaatagtcccacatcgaggagttaagagagaaagtgagtg-atgtgtgatataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttt 369  Q
    ||||||||||||||||   |||| ||| || ||||||||| ||||| |||||||||| |||||||||| || | |  || || | |||||||| ||||||    
T  1716638 aaatagtcccacatcgct-agttcagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttt 1716540  T
Q  370 tggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  1716539 tggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 1716486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 3643319 - 3643395
Alignment:
Q  197 taagtgaatttacagtccatgagggatgtttctagagagctcaactatctgtcatgttaagagttcaacaagtgaaa 273  Q
    |||| ||| ||||| |||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  3643319 taagcgaacttacaatccatgagggatgtttctagacggctcaactatccgtcatgttaagagttcaacaagtgaaa 3643395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 7524973 - 7525040
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtg 422  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  7524973 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 7525040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 4103250 - 4103318
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    ||||||||||| |||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  4103250 cctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 4103318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 5350672 - 5350712
Alignment:
Q  383 gtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgg 5350712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  357 tttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgt 421  Q
    |||||||||||||||  | |||||||||||| |||  ||| ||||| ||| ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 30521237 - 30521316
Alignment:
Q  345 acaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    ||||||| | ||||||||  |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  30521237 acaaatcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 30521316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 10791754 - 10791687
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtg 422  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  10791754 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 10791687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 10795992 - 10795925
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtg 422  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  10795992 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 10795925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 423
Target Start/End: Original strand, 8875703 - 8875762
Alignment:
Q  364 gccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    ||||||||||| |||||||||||| |||| ||| |||||| |||||||||||||||||||    
T  8875703 gccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtgg 8875762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 424
Target Start/End: Complemental strand, 14669897 - 14669742
Alignment:
Q  270 gaaatagtcccacatcgaggagttaagagagaaagtgagtg-atgtgtgatataaaatcagaagcgagttcagcatacaaatcctgcctttctcagcctt 368  Q
    ||||||||||||||||||| ||| |||| || || ||||   |||| |||||||||| ||| | ||||  || | | ||| || | |||||||| |||||    
T  14669897 gaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctt 14669798  T
Q  369 ttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14669797 ttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14669742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 424
Target Start/End: Original strand, 14716251 - 14716365
Alignment:
Q  310 gatgtgtgatataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaa 409  Q
    ||||| |||||||||| ||| | |||||||| | | ||| || | |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  14716251 gatgtctgatataaaagcagcaccgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaa 14716350  T
Q  410 tatctgatatgtgga 424  Q
    ||||| |||||||||    
T  14716351 tatctaatatgtgga 14716365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 14652530 - 14652599
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14652530 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14652599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 14654442 - 14654373
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14654442 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14654373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 14662321 - 14662390
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14662321 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14662390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 14664233 - 14664164
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14664233 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14664164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 14674486 - 14674555
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14674486 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14674555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 14676637 - 14676706
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14676637 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14676706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 14679864 - 14679933
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14679864 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14679933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 14681604 - 14681673
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14681604 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14681673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 14683755 - 14683824
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14683755 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14683824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 14706093 - 14706162
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14706093 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14706162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 14708583 - 14708652
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14708583 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 14708652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 33988075 - 33988143
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  33988075 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 33988143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 28366301 - 28366234
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtg 422  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  28366301 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 28366234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 38175632 - 38175565
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtg 422  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  38175632 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 38175565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 14667213 - 14667144
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||| |||||||||||||||| |||||    
T  14667213 cctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtgga 14667144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 37422175 - 37422242
Alignment:
Q  356 ctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    ||||||| ||||||||||| ||||||||||||| ||  ||| ||||||||||||||||||||||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtgg 37422242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 11872583 - 11872515
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||||| |||||||| || |||||||||||| |||| ||| ||||||||||||||| ||||||||||    
T  11872583 cctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtgg 11872515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 423
Target Start/End: Original strand, 44878950 - 44879056
Alignment:
Q  317 gatataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctga 416  Q
    ||||||||| |||| |||||  || ||| ||| || | |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  44878950 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 44879049  T
Q  417 tatgtgg 423  Q
    |||||||    
T  44879050 tatgtgg 44879056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 423
Target Start/End: Complemental strand, 44880971 - 44880865
Alignment:
Q  317 gatataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctga 416  Q
    ||||||||| |||| |||||  || ||| ||| || | |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  44880971 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 44880872  T
Q  417 tatgtgg 423  Q
    |||||||    
T  44880871 tatgtgg 44880865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 37679760 - 37679828
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  37679760 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 37679828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 40054317 - 40054385
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  40054317 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 40054385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 41841254 - 41841186
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  41841254 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 41841186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 37682064 - 37682130
Alignment:
Q  357 tttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  37682064 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 37682130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 10944501 - 10944432
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    ||||||||  |||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  10944501 cctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtgga 10944432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 44582870 - 44582924
Alignment:
Q  367 ttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgt 421  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 44582924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 42555174 - 42555117
Alignment:
Q  366 cttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    ||||||||| |||||||||| || ||| ||||||||||||||||||| ||||||||||    
T  42555174 cttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtgg 42555117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 42220936 - 42220880
Alignment:
Q  366 cttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    ||||||||| |||||||||||||||||  || |||| |||||||||||||||||||||    
T  42220936 cttttggctaagatcaagtgtagtatc-tttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 161
Target Start/End: Original strand, 44878636 - 44878664
Alignment:
Q  133 ggaataaagaagaaatttgtggtgtataa 161  Q
    |||||||||||||||||||||||||||||    
T  44878636 ggaataaagaagaaatttgtggtgtataa 44878664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 161
Target Start/End: Complemental strand, 44881285 - 44881257
Alignment:
Q  133 ggaataaagaagaaatttgtggtgtataa 161  Q
    |||||||||||||||||||||||||||||    
T  44881285 ggaataaagaagaaatttgtggtgtataa 44881257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 26984769 - 26984700
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  26984769 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 26984700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 26998842 - 26998773
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  26998842 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 26998773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 11652494 - 11652426
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  11652494 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 11652426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 49106631 - 49106563
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  49106631 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 49106563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 3461244 - 3461177
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtg 422  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  3461244 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 3461177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 49108735 - 49108668
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtg 422  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  49108735 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 49108668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 50077301 - 50077234
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtg 422  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  50077301 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 50077234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 21503706 - 21503751
Alignment:
Q  378 atcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 21503751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 48205836 - 48205905
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||| ||| |||| |||||||||||| ||| |||| | |||||||||| |||||||||    
T  48205836 cctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtgga 48205905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 34481193 - 34481155
Alignment:
Q  353 tgcctttctcagccttttggctgagatcaagtgtagtat 391  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  34481193 tgcctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 30733993 - 30734062
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  30733993 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 30734062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 32918085 - 32918154
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  32918085 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgga 32918154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 2841119 - 2841051
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  2841119 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 2841051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 43850054 - 43850122
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  43850054 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 43850122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 424
Target Start/End: Original strand, 30731927 - 30732082
Alignment:
Q  270 gaaatagtcccacatcgaggagttaagagagaaagtgagtg-atgtgtgatataaaatcagaagcgagttcagcatacaaatcctgcctttctcagcctt 368  Q
    ||||||||||||||||||| ||| |||| || || ||||   |||| |||||||||| ||| | ||||  || | | ||| || | |||||||| |||||    
T  30731927 gaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctt 30732026  T
Q  369 ttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgga 424  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  30732027 ttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtgga 30732082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 423
Target Start/End: Original strand, 9032021 - 9032126
Alignment:
Q  318 atataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    |||||||| || |||||| |||| | | ||| || | |||||||| ||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||    
T  9032021 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgat 9032120  T
Q  418 atgtgg 423  Q
    ||||||    
T  9032121 atgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 417
Target Start/End: Original strand, 8973280 - 8973379
Alignment:
Q  318 atataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    |||||||| || ||||||||||| | | ||| || | |||||||| ||||||||||| ||||||||||||||||| ||| |||| |||||||||||||||    
T  8973280 atataaaagcataagcgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 8973379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 417
Target Start/End: Original strand, 9026754 - 9026853
Alignment:
Q  318 atataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    |||||||| || |||||| |||| | | ||| || | |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  9026754 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 9026853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 9008026 - 9008088
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  9008026 cctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 9008088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 423
Target Start/End: Original strand, 9020815 - 9020920
Alignment:
Q  318 atataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    |||||||| || ||||||||||| | | ||| || | | |||||| ||||||||||| ||||||||||||||||| ||| |||||| ||||||||||||     
T  9020815 atataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgag 9020914  T
Q  418 atgtgg 423  Q
    ||||||    
T  9020915 atgtgg 9020920  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 417
Target Start/End: Original strand, 8979290 - 8979389
Alignment:
Q  318 atataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    |||||||| || |||| |||||| | | ||| || | |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||    
T  8979290 atataaaagcataagcaagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 417
Target Start/End: Original strand, 9023415 - 9023514
Alignment:
Q  318 atataaaatcagaagcgagttcagcatacaaatcctgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    |||||||| || |||||||| || | | ||| || | |||||||| ||||||||||| ||||||||||||||||| ||| |||| |||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T

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Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 10763978 - 10763908
Alignment:
Q  357 tttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtggatca 427  Q
    |||||| | |||||| || ||||||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatca 10763908  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 19232501 - 19232435
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtg 422  Q
    |||||||| ||||||||||| |||||||||||| |||| ||| |||||||||||||| ||||||||||    
T  19232501 cctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtg 19232435  T

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Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 8992151 - 8992215
Alignment:
Q  353 tgcctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    |||||||||||| ||||||||| ||||||||||||||||  ||| |||| |||| ||||||||||    
T  8992151 tgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgat 8992215  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 35701894 - 35701962
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgatatgtgg 423  Q
    ||||||||| | |||||||| ||||||||||| ||||  |||||||| |||||||||| ||||||||||    
T  35701894 cctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgg 35701962  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 8984698 - 8984760
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    |||||||| ||||||||||| ||||||||||||||||  ||| |||| |||||||||| ||||    
T  8984698 cctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 9030412 - 9030460
Alignment:
Q  364 gccttttggctgagatcaagtgtagtatcagtttttatcagtttaatat 412  Q
    ||||||||||| ||||||||||||||||| ||| |||||| ||||||||    
T  9030412 gccttttggctaagatcaagtgtagtatctgttcttatcaatttaatat 9030460  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 8988469 - 8988522
Alignment:
Q  364 gccttttggctgagatcaagtgtagtatcagtttttatcagtttaatatctgat 417  Q
    ||||||||||  ||||||||||||||||  ||| ||||||||||||||| ||||    
T  8988469 gccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgat 8988522  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 15758605 - 15758568
Alignment:
Q  355 cctttctcagccttttggctgagatcaagtgtagtatc 392  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  15758605 cctttctcagccttttggctaagatcaagtgtaatatc 15758568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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