View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_high_22 (Length: 411)

Name: NF18339_high_22
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_high_22
NF18339_high_22
[»] chr3 (3 HSPs)
chr3 (18-411)||(51113924-51114317)
chr3 (294-411)||(514871-514988)
chr3 (280-320)||(27006006-27006046)
[»] chr4 (14 HSPs)
chr4 (266-411)||(640726-640871)
chr4 (270-411)||(55505248-55505389)
chr4 (266-411)||(546724-546869)
chr4 (287-411)||(1524626-1524750)
chr4 (294-411)||(12121600-12121717)
chr4 (266-410)||(553290-553434)
chr4 (301-411)||(1513547-1513657)
chr4 (279-411)||(1552913-1553045)
chr4 (301-411)||(1489504-1489614)
chr4 (285-411)||(1508146-1508272)
chr4 (301-411)||(1537910-1538020)
chr4 (294-411)||(1545612-1545729)
chr4 (276-407)||(570172-570303)
chr4 (270-316)||(6006142-6006188)
[»] chr6 (2 HSPs)
chr6 (294-410)||(28934888-28935004)
chr6 (266-345)||(9411166-9411245)
[»] chr1 (2 HSPs)
chr1 (294-410)||(9580908-9581024)
chr1 (270-324)||(43634012-43634066)
[»] chr8 (2 HSPs)
chr8 (280-411)||(27922333-27922464)
chr8 (266-371)||(32151112-32151217)
[»] chr2 (1 HSPs)
chr2 (296-411)||(45245228-45245343)
[»] chr5 (1 HSPs)
chr5 (294-411)||(41901678-41901795)


Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 51114317 - 51113924
Alignment:
Q  18 acacacacaaataaaaacatctagtctagcgtataatataataaaagggataaataagttatatccgtaactaaatacatatatgtaagttgacatttat 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51114317 acacacacaaataaaaacatctagtctagcatataatataataaaagggataaataagttaaatccgtaactaaatacatatatgtaagttgacatttat 51114218  T
Q  118 aaaataaattaatttctcatataagtaaatccgtaaacaacaaacaacttgcatttcagagtttatacttcagaagagttgtttcatgtttcagacagct 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51114217 aaaataaattaatttctcatataagtaaatccgtaatcaacaaacaacttgcatttcagagtttatacttcagcagagttgtttcatgtttcagacagct 51114118  T
Q  218 accaaacaaagcagttgtggctcaagtagaatttcattttctcggttgaatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51114117 accaaacaaagcagttgtggctcaagtagaatttcattttctcgcttgaatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatat 51114018  T
Q  318 cattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttctaccacatgcttcactccc 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51114017 cattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctaccacatgcttcactccc 51113924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 411
Target Start/End: Complemental strand, 514988 - 514871
Alignment:
Q  294 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttct 393  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||  ||||||||||  ||||||  ||||||| |||||||  |||  |||||| ||||      
T  514988 tctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgcagtttttc 514889  T
Q  394 accacatgcttcactccc 411  Q
    ||||||||||||||||||    
T  514888 accacatgcttcactccc 514871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 27006046 - 27006006
Alignment:
Q  280 ggagctgttatttctctcaatgatggccttgaaaatatcat 320  Q
    |||||||| |||| ||||| |||||||||||||||||||||    
T  27006046 ggagctgtaatttttctcagtgatggccttgaaaatatcat 27006006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 411
Target Start/End: Original strand, 640726 - 640871
Alignment:
Q  266 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 365  Q
    |||||||||||||||||| |  ||| | ||||||||||||||||||||||| ||||||| |||| | |||||||| |||||||  |||||||||||||||    
T  640726 aatcaaaaccaggtggagttactatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaatt 640825  T
Q  366 aatctctcctagttttgtgcatttttctaccacatgcttcactccc 411  Q
     | ||||| || || | |||| |||||||||||||| |||||||||    
T  640826 gacctctcttaattctttgcagttttctaccacatgattcactccc 640871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 55505389 - 55505248
Alignment:
Q  270 aaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatc 369  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||| ||||||| |||||| | ||| ||||||||||  |||||| || || || |||    
T  55505389 aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatc 55505290  T
Q  370 tctcctagttttgtgcatttttctaccacatgcttcactccc 411  Q
    |||| ||||| |||||| ||||||| ||| || |||||||||    
T  55505289 tctcttagttgtgtgcagttttctaacacgtgtttcactccc 55505248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 411
Target Start/End: Original strand, 546724 - 546869
Alignment:
Q  266 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 365  Q
    |||| ||||||| ||||||| |||| | |||||||||||||||| |||||| |||||| |||||   |||| ||| |||||||  |||| || |||||||    
T  546724 aatccaaaccagatggagctattatctttctcaatgatggccttaaaaataacattgaagcaacggcattaacattcactttattacaagcccttaaatt 546823  T
Q  366 aatctctcctagttttgtgcatttttctaccacatgcttcactccc 411  Q
     ||||||| |||||||||||| ||||||| |||||| |||||||||    
T  546824 gatctctcttagttttgtgcagttttctagcacatgtttcactccc 546869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 411
Target Start/End: Complemental strand, 1524750 - 1524626
Alignment:
Q  287 ttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgca 386  Q
    |||| |||||||||||||| ||||| |||| |||||||||||||||  ||||||| |||||| |||||||| | |||||||||||||  |||| ||||||    
T  1524750 ttatctctctcaatgatggtcttgataatagcattgaggcaacaaagctagcatgaactttacaacaacccctcaaattaatctctctcagttgtgtgca 1524651  T
Q  387 tttttctaccacatgcttcactccc 411  Q
     ||||||| |||||  |||||||||    
T  1524650 gttttctatcacataattcactccc 1524626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 294 - 411
Target Start/End: Complemental strand, 12121717 - 12121600
Alignment:
Q  294 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttct 393  Q
    |||||||||||||||||||||||||| |||||||| || || |  |||||||| || ||||   || ||||  ||||||| ||||| |||||||||||||    
T  12121717 tctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttttct 12121618  T
Q  394 accacatgcttcactccc 411  Q
    ||||||||||||||||||    
T  12121617 accacatgcttcactccc 12121600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 410
Target Start/End: Original strand, 553290 - 553434
Alignment:
Q  266 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 365  Q
    ||||||||||||||||||||  ||| | ||||||||||| || ||||  || |||||||||||||| ||| ||||||||||||  |||||||   ||||     
T  553290 aatcaaaaccaggtggagctcctatctttctcaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccccccaaatc 553389  T
Q  366 aatctctcctagttttgtgcatttttctaccacatgcttcactcc 410  Q
     |||||||  |||| |||||| |||||||||||||| ||||||||    
T  553390 gatctctctaagttgtgtgcagttttctaccacatgattcactcc 553434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 411
Target Start/End: Complemental strand, 1513657 - 1513547
Alignment:
Q  301 gatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttctaccacat 400  Q
    ||||||||||||||||||| |||||||| || || | ||| ||||||| |||||   || ||||| |||||||  |||| |||||||||||||| ||||     
T  1513657 gatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaa 1513558  T
Q  401 gcttcactccc 411  Q
    |||||||||||    
T  1513557 gcttcactccc 1513547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 411
Target Start/End: Complemental strand, 1553045 - 1552913
Alignment:
Q  279 tggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagt 378  Q
    |||||| ||||| | ||||||||||||||||||||||| || ||| ||||||| || |  || |||||||| |||||| || ||||| ||||||| ||||    
T  1553045 tggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagt 1552946  T
Q  379 tttgtgcatttttctaccacatgcttcactccc 411  Q
    |    ||| |||||| | |||||||||||||||    
T  1552945 tgcaagcaattttctccgacatgcttcactccc 1552913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 411
Target Start/End: Complemental strand, 1489614 - 1489504
Alignment:
Q  301 gatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttctaccacat 400  Q
    ||||||||||||||||||| |||||||| || || | ||||||||| |  |||    || ||||| ||||||| ||||| || ||||||||||| |||||    
T  1489614 gatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttgtgcgcatttttctagcacat 1489515  T
Q  401 gcttcactccc 411  Q
    |||||||||||    
T  1489514 gcttcactccc 1489504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 411
Target Start/End: Complemental strand, 1508272 - 1508146
Alignment:
Q  285 tgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtg 384  Q
    |||||||| |||||| ||||||||||||||||||| |||||||| || || | || | || |||  || |   || ||||| ||||||| ||||| ||||    
T  1508272 tgttatttttctcaacgatggccttgaaaatatcaatgaggcaagaacatcaccacgtaccttaggaccatatttcaaattgatctctcttagttgtgtg 1508173  T
Q  385 catttttctaccacatgcttcactccc 411  Q
    |||||||||| | ||||||||||||||    
T  1508172 catttttctagcgcatgcttcactccc 1508146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 411
Target Start/End: Complemental strand, 1538020 - 1537910
Alignment:
Q  301 gatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttctaccacat 400  Q
    ||||||||||||||||||| ||||| || || || | ||| ||||| || ||| |  || ||||| ||||||| |||||  ||||||||||||| |||||    
T  1538020 gatggccttgaaaatatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttgagtgcatttttctagcacat 1537921  T
Q  401 gcttcactccc 411  Q
     ||||||||||    
T  1537920 acttcactccc 1537910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 411
Target Start/End: Original strand, 1545612 - 1545729
Alignment:
Q  294 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttct 393  Q
    |||||||||||||||||| ||||  | | | |||| || ||||||||||||||||  ||||||| | ||||| ||| ||| ||||| |||||| |||| |    
T  1545612 tctcaatgatggccttgataatactaataaagcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagtttttt 1545711  T
Q  394 accacatgcttcactccc 411  Q
    ||| |||  |||||||||    
T  1545712 accgcatctttcactccc 1545729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 407
Target Start/End: Original strand, 570172 - 570303
Alignment:
Q  276 aggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcct 375  Q
    ||||||| | ||||| | |||||||||||| ||||| |||||||| ||| |||||| |||   |||||||||| | ||   ||| ||||| ||||| |      
T  570172 aggtggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctc 570271  T
Q  376 agttttgtgcatttttctaccacatgcttcac 407  Q
    |||| |||||| |||||||||||||| |||||    
T  570272 agttgtgtgcagttttctaccacatgattcac 570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 6006142 - 6006188
Alignment:
Q  270 aaaaccaggtggagctgttatttctctcaatgatggccttgaaaata 316  Q
    ||||||||||||||| ||||| | ||||||||||||||||| |||||    
T  6006142 aaaaccaggtggagcagttatctttctcaatgatggccttgtaaata 6006188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 28934888 - 28935004
Alignment:
Q  294 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttct 393  Q
    ||||||||||| |||||  ||||  | |||||| || ||||||| ||||||||||| |||| | |  ||||  ||||||| ||||| |||||| ||||||    
T  28934888 tctcaatgatgaccttggtaatactagtgaggctaccaaattaggatgcactttaacacaatcatccaaatagatctctcttagttgtgtgcaattttct 28934987  T
Q  394 accacatgcttcactcc 410  Q
    |||||||||||||||||    
T  28934988 accacatgcttcactcc 28935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 9411166 - 9411245
Alignment:
Q  266 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcact 345  Q
    |||||||||||||||||| | |||| |  |||||||| ||||||||||||| |||   | |||||| |||||||||||||    
T  9411166 aatcaaaaccaggtggagtttttatcttgctcaatgacggccttgaaaataccatatcgtcaacaatattagcatgcact 9411245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 9580908 - 9581024
Alignment:
Q  294 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttct 393  Q
    |||||| |||||||||||| ||| |||||| | ||| | | ||  |||||||||| |||||||| | |||| ||||||| | |||| |||||| ||||||    
T  9580908 tctcaacgatggccttgaagataccattgacgaaaccacactacgatgcactttataacaacccctcaaatcaatctcttccagttgtgtgcaattttct 9581007  T
Q  394 accacatgcttcactcc 410  Q
    |||||| ||||||||||    
T  9581008 accacacgcttcactcc 9581024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 43634012 - 43634066
Alignment:
Q  270 aaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgag 324  Q
    ||||| |||||| ||| |||| | ||||||||||||||||||||||| |||||||    
T  43634012 aaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccattgag 43634066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 411
Target Start/End: Original strand, 27922333 - 27922464
Alignment:
Q  280 ggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagtt 379  Q
    ||||||||||| | |||||| |||||||||||| ||| ||| || | ||||| ||||||||| ||||||  |||||| |  ||| |||||| ||  ||||    
T  27922333 ggagctgttatctgtctcaacgatggccttgaagataccatcgaagaaacaatattagcatgtactttatgacaaccatccaaactaatctttctcagtt 27922432  T
Q  380 ttgtgcatttttctaccacatgcttcactccc 411  Q
      ||||| |||||||||||||| |||||||||    
T  27922433 gagtgcagttttctaccacatggttcactccc 27922464  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 32151112 - 32151217
Alignment:
Q  266 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 365  Q
    ||||| ||| ||||||||| ||||| | ||||||||||||||||||||||| ||||    |||||| || ||||||||||| |  ||||||| |||||||    
T  32151112 aatcataacgaggtggagcagttatctttctcaatgatggccttgaaaataccattttatcaacaatatcagcatgcacttgatcacaaccccttaaatt 32151211  T
Q  366 aatctc 371  Q
     |||||    
T  32151212 gatctc 32151217  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 411
Target Start/End: Complemental strand, 45245343 - 45245228
Alignment:
Q  296 tcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttctac 395  Q
    |||| |||||||||||||||| ||| ||| ||| || |||||||||||||| ||| ||   | | ||||| ||||||   |||| |||||| ||||||||    
T  45245343 tcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcaattttctac 45245244  T
Q  396 cacatgcttcactccc 411  Q
    |||||| |||||||||    
T  45245243 cacatgtttcactccc 45245228  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 411
Target Start/End: Complemental strand, 41901795 - 41901678
Alignment:
Q  294 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttct 393  Q
    |||||| || || |||||||||| |||  | | ||||| ||||||||| |||||||||||||| || ||| |||||| ||  | ||  || || ||||||    
T  41901795 tctcaacgacggtcttgaaaataccatcaaagaaacaacattagcatgtactttaaaacaaccattcaaactaatctttctcaattgcgtacagttttct 41901696  T
Q  394 accacatgcttcactccc 411  Q
    ||||||||||||||||||    
T  41901695 accacatgcttcactccc 41901678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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