View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_high_29 (Length: 374)

Name: NF18339_high_29
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_high_29
NF18339_high_29
[»] chr3 (34 HSPs)
chr3 (78-261)||(42345468-42345651)
chr3 (275-357)||(42344364-42344446)
chr3 (80-158)||(28690421-28690499)
chr3 (79-158)||(32221006-32221085)
chr3 (79-158)||(6910507-6910586)
chr3 (78-155)||(38138001-38138078)
chr3 (79-158)||(21797729-21797808)
chr3 (79-158)||(33415972-33416051)
chr3 (79-158)||(43467752-43467831)
chr3 (79-158)||(20765369-20765448)
chr3 (79-158)||(27010484-27010563)
chr3 (80-158)||(13499346-13499424)
chr3 (79-152)||(42761493-42761566)
chr3 (79-158)||(21005466-21005545)
chr3 (79-158)||(27334741-27334820)
chr3 (79-158)||(39866151-39866230)
chr3 (79-158)||(42490206-42490285)
chr3 (82-155)||(43181369-43181442)
chr3 (81-158)||(44561957-44562034)
chr3 (79-154)||(36227722-36227797)
chr3 (79-158)||(54507814-54507893)
chr3 (36-78)||(42345676-42345718)
chr3 (83-144)||(19824485-19824546)
chr3 (84-157)||(30174896-30174969)
chr3 (79-158)||(25527574-25527653)
chr3 (84-154)||(48334537-48334607)
chr3 (78-150)||(21083168-21083240)
chr3 (79-154)||(15332816-15332891)
chr3 (119-154)||(22782441-22782476)
chr3 (119-154)||(22786805-22786840)
chr3 (79-154)||(33803699-33803774)
chr3 (80-154)||(26406018-26406092)
chr3 (85-157)||(3020218-3020290)
chr3 (86-158)||(30213977-30214048)
[»] chr8 (31 HSPs)
chr8 (79-158)||(14237453-14237532)
chr8 (79-158)||(42587258-42587337)
chr8 (79-158)||(132190-132269)
chr8 (79-158)||(623349-623428)
chr8 (80-158)||(22489285-22489363)
chr8 (78-158)||(8394519-8394599)
chr8 (79-158)||(18044598-18044678)
chr8 (79-158)||(2766058-2766137)
chr8 (83-158)||(24524258-24524333)
chr8 (79-158)||(36641868-36641947)
chr8 (79-158)||(38958771-38958850)
chr8 (78-158)||(4270117-4270197)
chr8 (79-158)||(616956-617035)
chr8 (79-158)||(5878489-5878568)
chr8 (79-158)||(38957343-38957422)
chr8 (79-158)||(40494557-40494636)
chr8 (80-158)||(41263983-41264061)
chr8 (79-158)||(11637955-11638031)
chr8 (106-155)||(32998625-32998674)
chr8 (79-154)||(24287937-24288012)
chr8 (80-158)||(35403690-35403768)
chr8 (79-151)||(33921671-33921740)
chr8 (110-155)||(2669996-2670041)
chr8 (81-154)||(4461483-4461556)
chr8 (106-158)||(36167881-36167933)
chr8 (79-154)||(3100501-3100576)
chr8 (78-158)||(13216730-13216810)
chr8 (83-154)||(33700087-33700158)
chr8 (79-154)||(34327072-34327147)
chr8 (108-154)||(18090504-18090550)
chr8 (106-154)||(38497251-38497299)
[»] chr4 (39 HSPs)
chr4 (79-154)||(17446643-17446718)
chr4 (79-158)||(19433368-19433447)
chr4 (79-158)||(35686580-35686659)
chr4 (79-155)||(26170163-26170239)
chr4 (79-158)||(2760740-2760819)
chr4 (79-158)||(12240187-12240266)
chr4 (79-158)||(25296589-25296668)
chr4 (79-158)||(47386296-47386375)
chr4 (79-158)||(25918376-25918452)
chr4 (79-152)||(45292011-45292084)
chr4 (78-151)||(55800979-55801052)
chr4 (79-158)||(4467530-4467609)
chr4 (79-158)||(17610453-17610532)
chr4 (79-158)||(38416660-38416739)
chr4 (79-158)||(54330700-54330779)
chr4 (79-158)||(9029459-9029538)
chr4 (79-158)||(12625424-12625503)
chr4 (79-158)||(29830516-29830595)
chr4 (79-154)||(38721514-38721589)
chr4 (79-158)||(43967896-43967975)
chr4 (79-158)||(44232087-44232166)
chr4 (79-158)||(55209584-55209663)
chr4 (79-150)||(50620496-50620567)
chr4 (78-155)||(5428752-5428829)
chr4 (81-158)||(32364344-32364421)
chr4 (106-158)||(55191997-55192049)
chr4 (79-158)||(26125881-26125960)
chr4 (108-158)||(51456418-51456468)
chr4 (79-152)||(35380904-35380977)
chr4 (79-158)||(23360345-23360424)
chr4 (79-158)||(36522978-36523057)
chr4 (80-154)||(27755899-27755973)
chr4 (84-158)||(32871375-32871449)
chr4 (84-154)||(37674881-37674951)
chr4 (106-158)||(34652062-34652114)
chr4 (111-157)||(9445309-9445355)
chr4 (88-154)||(29052237-29052303)
chr4 (79-153)||(30446479-30446553)
chr4 (106-154)||(2570919-2570967)
[»] scaffold0022 (1 HSPs)
scaffold0022 (79-158)||(100657-100736)
[»] chr7 (39 HSPs)
chr7 (79-158)||(16778678-16778757)
chr7 (79-154)||(11502590-11502665)
chr7 (79-154)||(39129936-39130011)
chr7 (80-158)||(20885276-20885354)
chr7 (78-158)||(42877559-42877639)
chr7 (79-158)||(7169296-7169375)
chr7 (79-158)||(25566558-25566637)
chr7 (79-158)||(40256229-40256308)
chr7 (80-150)||(6175007-6175077)
chr7 (79-157)||(32431368-32431446)
chr7 (78-158)||(46321161-46321241)
chr7 (79-154)||(3851251-3851326)
chr7 (79-158)||(36623481-36623560)
chr7 (79-158)||(40089928-40090007)
chr7 (79-158)||(47156200-47156279)
chr7 (79-158)||(48602609-48602688)
chr7 (79-152)||(46103380-46103453)
chr7 (78-158)||(23707432-23707512)
chr7 (79-158)||(28061525-28061604)
chr7 (79-158)||(38851857-38851936)
chr7 (79-158)||(41898161-41898240)
chr7 (79-158)||(7439076-7439155)
chr7 (79-158)||(30342247-30342325)
chr7 (79-158)||(42890354-42890433)
chr7 (79-152)||(36585841-36585914)
chr7 (85-154)||(44732189-44732258)
chr7 (79-158)||(21379917-21379996)
chr7 (79-158)||(35117298-35117377)
chr7 (105-158)||(2198775-2198828)
chr7 (76-129)||(41950790-41950843)
chr7 (78-158)||(41134497-41134577)
chr7 (119-158)||(41088760-41088799)
chr7 (80-154)||(5788388-5788462)
chr7 (106-156)||(26161774-26161824)
chr7 (119-157)||(33010370-33010408)
chr7 (120-158)||(36341793-36341831)
chr7 (79-148)||(36516022-36516091)
chr7 (104-157)||(44018887-44018940)
chr7 (113-157)||(7880601-7880645)
[»] chr2 (25 HSPs)
chr2 (79-158)||(33607545-33607624)
chr2 (79-158)||(36719334-36719413)
chr2 (79-158)||(44365330-44365409)
chr2 (80-158)||(9172157-9172235)
chr2 (79-158)||(2182970-2183049)
chr2 (79-158)||(5405169-5405248)
chr2 (79-158)||(7608222-7608301)
chr2 (79-158)||(11841603-11841682)
chr2 (79-158)||(19141076-19141155)
chr2 (80-158)||(36072347-36072425)
chr2 (97-158)||(39358308-39358369)
chr2 (79-158)||(8042032-8042111)
chr2 (79-154)||(13125155-13125230)
chr2 (79-156)||(32774767-32774844)
chr2 (79-158)||(36177590-36177669)
chr2 (80-158)||(7800020-7800098)
chr2 (106-154)||(19165819-19165867)
chr2 (79-157)||(33228455-33228533)
chr2 (106-154)||(44645048-44645096)
chr2 (115-158)||(13598935-13598978)
chr2 (106-158)||(6223239-6223291)
chr2 (79-150)||(24093083-24093154)
chr2 (106-157)||(32887080-32887131)
chr2 (78-152)||(11931844-11931918)
chr2 (84-158)||(13443108-13443182)
[»] scaffold0018 (1 HSPs)
scaffold0018 (79-155)||(67780-67856)
[»] chr6 (27 HSPs)
chr6 (78-158)||(21540638-21540718)
chr6 (79-158)||(18668698-18668777)
chr6 (79-154)||(20226308-20226383)
chr6 (79-154)||(22120292-22120367)
chr6 (79-156)||(32671991-32672068)
chr6 (79-155)||(20437027-20437103)
chr6 (79-158)||(22054945-22055024)
chr6 (78-158)||(17213801-17213881)
chr6 (79-158)||(4148104-4148183)
chr6 (79-158)||(24623951-24624030)
chr6 (81-158)||(24955408-24955485)
chr6 (106-158)||(28477926-28477978)
chr6 (106-158)||(29790379-29790431)
chr6 (79-158)||(1040997-1041076)
chr6 (79-158)||(12226148-12226227)
chr6 (79-158)||(19087968-19088047)
chr6 (79-158)||(32414689-32414768)
chr6 (78-154)||(2360167-2360243)
chr6 (79-158)||(6563399-6563478)
chr6 (79-158)||(17257661-17257740)
chr6 (78-158)||(29694056-29694136)
chr6 (78-157)||(3989275-3989353)
chr6 (112-158)||(10520641-10520687)
chr6 (83-154)||(31869913-31869984)
chr6 (118-154)||(32530191-32530227)
chr6 (125-158)||(25475869-25475902)
chr6 (113-158)||(31568833-31568878)
[»] chr5 (22 HSPs)
chr5 (79-158)||(18094091-18094170)
chr5 (79-158)||(27109861-27109940)
chr5 (83-158)||(11251287-11251362)
chr5 (78-158)||(40156371-40156453)
chr5 (79-158)||(978250-978329)
chr5 (79-158)||(14634167-14634246)
chr5 (79-158)||(33387392-33387471)
chr5 (79-152)||(9502637-9502710)
chr5 (79-156)||(30354880-30354957)
chr5 (79-158)||(7224338-7224417)
chr5 (79-158)||(34112130-34112209)
chr5 (80-154)||(12446878-12446952)
chr5 (79-158)||(33587479-33587558)
chr5 (79-158)||(8086041-8086119)
chr5 (79-158)||(11785736-11785815)
chr5 (78-158)||(7002517-7002597)
chr5 (106-158)||(18598705-18598757)
chr5 (79-158)||(38916263-38916342)
chr5 (80-158)||(3472288-3472366)
chr5 (80-148)||(12007518-12007586)
chr5 (106-158)||(27579467-27579519)
chr5 (125-154)||(9050632-9050661)
[»] chr1 (27 HSPs)
chr1 (79-158)||(25171326-25171405)
chr1 (79-156)||(36399273-36399350)
chr1 (79-158)||(30003706-30003786)
chr1 (79-155)||(40771782-40771858)
chr1 (79-158)||(9342655-9342734)
chr1 (79-158)||(17306127-17306206)
chr1 (79-158)||(27292813-27292892)
chr1 (79-158)||(40977498-40977577)
chr1 (79-156)||(52024201-52024278)
chr1 (79-158)||(6402420-6402499)
chr1 (79-158)||(11641077-11641156)
chr1 (79-158)||(36757496-36757575)
chr1 (79-158)||(42367306-42367385)
chr1 (79-156)||(30701893-30701970)
chr1 (79-158)||(16120449-16120528)
chr1 (84-158)||(42788558-42788631)
chr1 (97-158)||(4302288-4302349)
chr1 (79-158)||(6766542-6766621)
chr1 (79-158)||(15912348-15912426)
chr1 (108-158)||(38153316-38153366)
chr1 (80-154)||(42735176-42735250)
chr1 (79-158)||(7568507-7568586)
chr1 (79-150)||(22575597-22575668)
chr1 (123-158)||(26910249-26910284)
chr1 (115-150)||(44647759-44647794)
chr1 (80-158)||(50972643-50972721)
chr1 (113-157)||(16689996-16690040)
[»] scaffold0003 (1 HSPs)
scaffold0003 (79-158)||(161847-161926)
[»] scaffold0056 (1 HSPs)
scaffold0056 (79-148)||(71143-71212)
[»] scaffold0295 (1 HSPs)
scaffold0295 (79-154)||(13727-13802)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 78 - 261
Target Start/End: Complemental strand, 42345651 - 42345468
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaacattgtcatcatattcttc 177  Q
    |||||||||||||||||| |||||| | | |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42345651 tgtttcaaaatacatgtccaagtcaaccatttcacatatgtcgatgtacaattttgaccgttaatatctttaattatctaacattgtcatcattttcttc 42345552  T
Q  178 aaaacatcatccgtcttcacaatatgtttgataatattcttttgtctctcaagaaccttgtcatcataccggttaaaaaatata 261  Q
    ||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  42345551 aaagcatcatccctcttcacaatatgcttgataatattcttttgtctctcaagaaccttgtcatcataccagttacaaaatata 42345468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 42344446 - 42344364
Alignment:
Q  275 gaaaccctttcatttagtgcatctaaaaaatcttctatggttttttctggtacaagcaatcaagtagtgaccaagggagaatc 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42344446 gaaaccctttcatttagtgcatctaaaaaatcttctatggttttttctggtacaggcaatcaagtagtgaccaagggagaatc 42344364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 28690499 - 28690421
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28690499 tttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 28690421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 32221085 - 32221006
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32221085 gttttaaaatacatgtcaaagtcaaccacttcatatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 32221006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 6910586 - 6910507
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  6910586 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccgttaatctctttaattatctaa 6910507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 38138078 - 38138001
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatc 155  Q
    |||||||||||||||||| |||||| | |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  38138078 tgtttcaaaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgaccgttaatatctttaattatc 38138001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 21797808 - 21797729
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | ||||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  21797808 gtttcaaaatacatgtctaagtcaaccacttcacatatgttaatgcataattttgaccattaatatctttaattatctaa 21797729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 33416051 - 33415972
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  33416051 gtttcaaaatagatgtccaagtcaaccacttcacatatgtcaatgcacaattttgactgttaatatatttaattatctaa 33415972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 43467752 - 43467831
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | | || | ||||||||||||||||||||||||||||||||||||||||||||||    
T  43467752 gtttcaaaatacatgtctaagtcaaccattttatatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 43467831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 20765448 - 20765369
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  20765448 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 20765369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 27010484 - 27010563
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  27010484 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 27010563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 13499346 - 13499424
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  13499346 tttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 13499424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 42761493 - 42761566
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaatt 152  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  42761493 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaatt 42761566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 21005545 - 21005466
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | | |||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  21005545 gtttcaaaatacatgtccaagtcaaccatttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 21005466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 27334741 - 27334820
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  27334741 gtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 27334820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 39866151 - 39866230
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  39866151 gtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 39866230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 42490206 - 42490285
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| | |||||||||||||| |||||    
T  42490206 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgacagataatatctttaattttctaa 42490285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 43181369 - 43181442
Alignment:
Q  82 tcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatc 155  Q
    |||||||||||||| || ||| | ||||| || ||||||||||| |||||||||||||||||||||||||||||    
T  43181369 tcaaaatacatgtccaaatcaaccacttctcacatgtcaatgcataattttgaccgttaatatctttaattatc 43181442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 44562034 - 44561957
Alignment:
Q  81 ttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||  ||||| | |||||||| ||| |||| ||||| |||||||||||||||||||||||||||||    
T  44562034 ttcaaaatacatgtcgcagtcaaccacttcacacatgccaattcacaactttgaccgttaatatctttaattatctaa 44561957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 36227797 - 36227722
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||| ||||| ||||||   |||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  36227797 gtttcaaaatatatgtccaagtcaatcacttcacacatgccaatgcacaattttgaccgttaaaatctttaattat 36227722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 54507893 - 54507814
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| ||||| |||||| |||||| | ||||||||||||| |||| | |||||| |||||||||||||||||||||||||    
T  54507893 gttttaaaatgcatgtccaagtcaaccacttcacatatgttaatgtataatttttaccgttaatatctttaattatctaa 54507814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 42345718 - 42345676
Alignment:
Q  36 gttataaatcaaactctaattattttgctttgaataaatgtat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42345718 gttataaatcaaactctaattattttgctttgaataaatgtat 42345676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 19824546 - 19824485
Alignment:
Q  83 caaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatat 144  Q
    ||||||||||||| |||||| | |||||| ||||||||| |||||||||| |||||||||||    
T  19824546 caaaatacatgtccaagtcaaccacttcaaatatgtcaacgcacaattttaaccgttaatat 19824485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 30174969 - 30174896
Alignment:
Q  84 aaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    ||||||||||||||| ||| |||||||||| | |||||  ||||| ||||||| ||||||| ||||||||||||    
T  30174969 aaaatacatgtcaaaatcaactacttcacacaggtcaagacacaactttgaccattaatatatttaattatcta 30174896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 25527653 - 25527574
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||| |||||||||||  ||| | | |||||||| |||| ||||||||| ||||| ||||||||| |||||||||||||    
T  25527653 gtttccaaatacatgtcgcagttaaccacttcacacatgttaatgcacaactttgatcgttaatatttttaattatctaa 25527574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 48334537 - 48334607
Alignment:
Q  84 aaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||| ||| |  || | |||| |||||||| ||||||||||||| |||||||||||||||||    
T  48334537 aaaatacatgtcacagtaaaataatacacacatgtcaatacacaattttgaccattaatatctttaattat 48334607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 21083240 - 21083168
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaa 150  Q
    ||||||||||||||||||| ||||| | || ||||| ||  |||| ||||| ||||||| |||||||||||||    
T  21083240 tgtttcaaaatacatgtcatagtcaaccacgtcacacataccaatacacaactttgaccattaatatctttaa 21083168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 15332816 - 15332891
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||||  ||||| | ||| |||| ||| |||| ||||| ||||||| ||||||| |||||||||    
T  15332816 gtttcaaaatacatgtcccagtcaaccactacacacatgccaatacacaactttgaccattaatatttttaattat 15332891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 22782476 - 22782441
Alignment:
Q  119 caatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||||| |||||||||||||||||    
T  22782476 caatgcacaattttgaccattaatatctttaattat 22782441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 22786840 - 22786805
Alignment:
Q  119 caatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||||| |||||||||||||||||    
T  22786840 caatgcacaattttgaccattaatatctttaattat 22786805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 33803774 - 33803699
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||| ||||| | || ||| | |||| | |||| |||||||||| |||||||||||||||| |||||||||    
T  33803774 gtttcaaaaaacatgaccaaatcaaccactttatatatatcaatgcacacttttgaccgttaatatttttaattat 33803699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 26406018 - 26406092
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||||||  ||||| | ||| ||||||||  ||| ||||| ||||||| ||||||| |||||||||    
T  26406018 tttcaaaatacatgtcgcagtcaaccactgcacatatgctaatacacaactttgaccattaatatatttaattat 26406092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 3020218 - 3020290
Alignment:
Q  85 aaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    |||||||||||  ||||| | |||||| |||||||||| ||||| ||||||  |||||||| || ||||||||    
T  3020218 aaatacatgtcgtagtcaaccacttcatatatgtcaatacacaactttgactattaatatcattgattatcta 3020290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 30214048 - 30213977
Alignment:
Q  86 aatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| ||||| |||||| | |||||||||||| | ||||| ||||||||| |||||||| ||||||| |||||    
T  30214048 aatagatgtccaagtcaaccacttcacatatgccgatgcataattttgactgttaatat-tttaattttctaa 30213977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 14237532 - 14237453
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14237532 gtttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 14237453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 42587258 - 42587337
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  42587258 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaatttttaccgttaatatctttaattatctaa 42587337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 132269 - 132190
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||| |||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||    
T  132269 gttttaaaatacatgtccaagtcaactacttcacacatgccaatgtacaattttgaccgttaatatctttaattatctaa 132190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 623428 - 623349
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  623428 gtttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcataattttgactgttaatatctttaattttctaa 623349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 22489285 - 22489363
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||  |||||| | |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  22489285 tttcaaaatacatgtttaagtcaaccacttaacatatgtcaatgcacaattttgatcgttaatatctttaattatctaa 22489363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 8394599 - 8394519
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||||| |||||| | |||||| ||||||||||| |||||||| || ||||||||||||||||||||||    
T  8394599 tgtttcaaaatacatgtccaagtcaaccacttcatatatgtcaatgtacaattttaactgttaatatctttaattatctaa 8394519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 18044678 - 18044598
Alignment:
Q  79 gtttcaaaatacatgtc-aaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  ||||||| | |||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  18044678 gtttcaaaatacatgtataaagtcaaccacttcacatatgccaatgcacaattttgaccgttaatatatttaattatctaa 18044598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 2766058 - 2766137
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| || ||||| | |||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  2766058 gtttcaaaatacatgtccaaatcagccatttcacacatgtcaatgcacaattttaaccgttaatatatttaattatctaa 2766137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 24524333 - 24524258
Alignment:
Q  83 caaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||| |||||| | | |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  24524333 caaaatacatgtccaagtcaaccatttcacatatgtcaatgcacaattttgacggttaatatcttaaattatctaa 24524258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 36641868 - 36641947
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  36641868 gtttcaaaatacatgtctaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 36641947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 38958771 - 38958850
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||| ||||||  |||||| | ||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  38958771 gtttcaaaacacatgttcaagtcaaccacttcacatatgtcaatgcacaattttgactattaatatctttaattatctaa 38958850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 4270117 - 4270197
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||| |||||||||||| || | | | ||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  4270117 tgttttaaaatacatgtccaaattaaccacttcacatatgttaatgcataattttgaccgttaatatctttaattatctaa 4270197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 617035 - 616956
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||| | ||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  617035 gtttcaaaatacatgtccaagtcaacaacttaaaatatgacaatgcaaaattttgacagttaatatctttaattatctaa 616956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 5878568 - 5878489
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||| |||||| |||||| | |||||| | ||||||||||||||||||||| |||||||| |||||||||||||    
T  5878568 gtttcaaaatgcatgtccaagtcaaccacttcaaacatgtcaatgcacaattttgactgttaatatatttaattatctaa 5878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 38957422 - 38957343
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||| ||||||   |||||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  38957422 gtttcaaaatatatgtccaagtcaagcacttcacacatgccaatgcacaattttgacccttaatatctttaattatctaa 38957343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 40494636 - 40494557
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| |||||||||  ||||||||||||||| |||||    
T  40494636 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactattaatatctttaattttctaa 40494557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 41264061 - 41263983
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||| ||||||   |||||||||||  |||| || ||||||||||||||||||||||||||||||||    
T  41264061 tttcaaaatacatgtccaagtcaatcacttcacatataccaatacataattttgaccgttaatatctttaattatctaa 41263983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 11638031 - 11637955
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||   ||||||| | |||||| ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  11638031 gtttcaaaatacat---aaagtcaaccacttcatatatgtcaatgaacaattttgaccgttaatatcattaattatctaa 11637955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 32998674 - 32998625
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatc 155  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32998674 acttcacatatgccaatgcacaattttgaccgttaatatctttaattatc 32998625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 24288012 - 24287937
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||||  | ||| | |||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  24288012 gtttcaaaatacatgtcgcaatcaacgacttcacacatgccaatgcacaactttgaccgttaatatctttaattat 24287937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 35403768 - 35403690
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||| |||| |   | |||||||||||||| | |||||||||||| |||||||||||||||||||||    
T  35403768 tttcaaaatacatgtccaagttaatcatttcacatatgtcaacgtacaattttgaccattaatatctttaattatctaa 35403690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 33921740 - 33921671
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaat 151  Q
    ||||||||||||||||  |||||    |||||||||||||||||| |||||||||||| ||||||||||||||    
T  33921740 gtttcaaaatacatgttcaagtcc---acttcacatatgtcaatgtacaattttgaccattaatatctttaat 33921671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 2669996 - 2670041
Alignment:
Q  110 cacatatgtcaatgcacaattttgaccgttaatatctttaattatc 155  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||    
T  2669996 cacatatgtcaatgcacaattttgacttttaatatctttaattatc 2670041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 4461483 - 4461556
Alignment:
Q  81 ttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||   |||| |||||||||| ||| | |||||||||||||||  |||||||||||||||||    
T  4461483 ttcaaaatacatgtcgttgtcaactacttcacacatgacgatgcacaattttgactattaatatctttaattat 4461556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 36167933 - 36167881
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||| | |||| ||||||||||||||| |||||||||||||||||||||    
T  36167933 acttcacacacgtcagtgcacaattttgacctttaatatctttaattatctaa 36167881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 3100501 - 3100576
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||||||| || |||   |||||| ||||||||||||||||||||||| |||| |||  ||||||||    
T  3100501 gtttcaaaatacatgtccaaatcaatcacttcagatatgtcaatgcacaattttgactgttattataattaattat 3100576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 13216730 - 13216810
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||| ||| ||||||||  ||||| | |||||||||| ||| |||||||||||||||  ||||||||||| | |||||||    
T  13216730 tgttttaaattacatgtcttagtcaaccacttcacataggtcgatgcacaattttgactattaatatcttttaatatctaa 13216810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 33700087 - 33700158
Alignment:
Q  83 caaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||  ||||| | ||| |||| ||| |||| ||||| ||||||| |||||||||||||||||    
T  33700087 caaaatacatgtcgcagtcaaccactgcacacatgccaatacacaactttgaccattaatatctttaattat 33700158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 34327072 - 34327147
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||| ||||||||||||  |||| |||||| ||| |||| |||||||||||||||   ||||||| |||||||||    
T  34327072 gtttctaaatacatgtcattgtcaactactttacacatgttaatgcacaattttgagtattaatatatttaattat 34327147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 18090550 - 18090504
Alignment:
Q  108 ttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||| |||||||||||||| ||||| |||| ||||||||||||||    
T  18090550 ttcacacatgtcaatgcacaactttgatcgttgatatctttaattat 18090504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 38497299 - 38497251
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||| |||| | |||| ||||||||||| ||||||||||||||||||    
T  38497299 acttcatatatattaatgtacaattttgactgttaatatctttaattat 38497251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 17446643 - 17446718
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17446643 gtttcaaaatacatgtccaagtcaactacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 17446718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 19433368 - 19433447
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19433368 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccgttaatatctttaattatctaa 19433447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 35686659 - 35686580
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||| |||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35686659 gtttcaaaatgcatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccgttaatatctttaattatctaa 35686580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 26170239 - 26170163
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatc 155  Q
    ||||||||||||||||| |||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  26170239 gtttcaaaatacatgtccaagtcaaccacttcacatatgacaatgctcaattttgaccgttaatatctttaattatc 26170163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 2760740 - 2760819
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  2760740 gtttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcataattttgactgttaatatctttaattttctaa 2760819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 12240187 - 12240266
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| |||||||||||| | |||||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  12240187 gtttcaaaatatatgtcaaagtcaaccacttcacatatgccaatacacaattttgaccattaatatctttaattatctaa 12240266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 25296589 - 25296668
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  25296589 gtttcaaaatacatgtataagtcaaccacttcacacatgtcaatgcacaattttgaccgttaataactttaattatctaa 25296668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 47386296 - 47386375
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| |||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||    
T  47386296 gtttcaaaatacatgtccaagtcaactacttcacacatgccaatgtataattttgaccgttaatatctttaattatctaa 47386375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 25918452 - 25918376
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  ||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25918452 gtttcaaaatacatgtttaagtca---acttcacatatgtcaatgtacaattttgaccgttaatatctttaattatctaa 25918376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 45292084 - 45292011
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaatt 152  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  45292084 gtttcaaaatacatgtccaagtcaactacttcacatatgccaatgcataattttgactgttaatatctttaatt 45292011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 55801052 - 55800979
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaat 151  Q
    ||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||| ||||||    
T  55801052 tgtttcaaaatacatgtcaaagtcaaccactttatatatgtcaatgcacaattttgaccgttaatatatttaat 55800979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 4467530 - 4467609
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||| | ||| |||||||| |||||||||||||||||||||||||||||||    
T  4467530 gtttcaaaatacatgtccaagtcaaccacttcaaacatgccaatgcacgattttgaccgttaatatctttaattatctaa 4467609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 17610532 - 17610453
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||  |||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  17610532 gtttcaaaatatatgttcaagtcaaccacttcacatatgccaatgcacaattttgaccgttgatatctttaattatctaa 17610453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 38416660 - 38416739
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  38416660 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 38416739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 54330700 - 54330779
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||| ||||||   ||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  54330700 gtttcaaaatagatgtccaagtcaatcacttcacatatgtcaatgcacaattttaaccgttaatatatttaattatctaa 54330779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 9029459 - 9029538
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||  ||||||   |||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  9029459 gttttaaaatacatgtttaagtcaatcacttcacatatgccaatgcacaattttgatcgttaatatctttaattatctaa 9029538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 12625503 - 12625424
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | ||| ||||||||  ||||||||||||||||||||||||| |||||||||||||    
T  12625503 gtttcaaaatacatgttcaagtcaaccactccacatatgctaatgcacaattttgaccgttaatatatttaattatctaa 12625424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 29830595 - 29830516
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||| | | |||||||||||||||||||| ||||||||  |||||||||||||||| |||||    
T  29830595 gtttcaaaatacatgtctaagtgaaccacttcacatatgtcaatgcataattttgattgttaatatctttaattttctaa 29830516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 38721589 - 38721514
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||| ||||||  |||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  38721589 gtttcaaaagacatgttcaagtcaaccacttcacatatgccaatgcacaattttgatcgttaatatctttaattat 38721514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 43967975 - 43967896
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  43967975 gtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 43967896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 44232087 - 44232166
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||| ||||||| |||||    
T  44232087 gtttcaaaatacatgtccaagtcaaccacttcacatatgacaatgcataattttgactgttaatatttttaattttctaa 44232166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 55209584 - 55209663
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||| ||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  55209584 gtttcaaaatacatgtccaagtcaaccactttacatatgccaatgcataattttgactgttaatatctttaattttctaa 55209663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 50620496 - 50620567
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaa 150  Q
    |||| |||||| ||||| |||||| | ||||||||||||||||||||||||||| ||||||||||| |||||    
T  50620496 gttttaaaatagatgtctaagtcaaccacttcacatatgtcaatgcacaattttaaccgttaatatttttaa 50620567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 5428829 - 5428752
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatc 155  Q
    ||||||||||||||||| | ||||| | |||||||| ||||||||| |||||||||||  |||| |||||||||||||    
T  5428829 tgtttcaaaatacatgtaacagtcaaccacttcacacatgtcaatgtacaattttgactattaacatctttaattatc 5428752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 32364344 - 32364421
Alignment:
Q  81 ttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||  ||| | |||||||||| |||||||||||||| ||| | ||| |||||||||||||||||||    
T  32364344 ttcaaaatacatgtcgcagttaactacttcacacatgtcaatgcacaactttaatcgtcaatatctttaattatctaa 32364421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 55192049 - 55191997
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||||||||||    
T  55192049 acttcacatatgccaatccacaattttgaccgttaatatatttaattatctaa 55191997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 26125960 - 26125881
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  ||||||   |||||||||||| ||||||||||||||||  ||||||||||||| || |||||    
T  26125960 gtttcaaaatacatgttcaagtcaatcacttcacatatggcaatgcacaattttgattgttaatatctttagttgtctaa 26125881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 51456418 - 51456468
Alignment:
Q  108 ttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  51456418 ttcacatatgtcaatgtataattttgactgttaatatctttaattatctaa 51456468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 35380904 - 35380977
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaatt 152  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||  | ||||||||| |||||||| |||||||    
T  35380904 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatatataattttgactgttaatatatttaatt 35380977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 23360424 - 23360345
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| |||| | | ||| ||| || |||||||| ||||||||| |||||  ||||||||||||||||||||||    
T  23360424 gtttcaaaatatatgttacattcaactattttacatatgttaatgcacaactttgaaagttaatatctttaattatctaa 23360345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 36522978 - 36523057
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||| ||||||||  ||||| | | |||||| ||||||||||| || ||||||| |||||||||| ||||||||||    
T  36522978 gtttcaaagtacatgtcgcagtcaaccatttcacacatgtcaatgcataactttgaccattaatatcttgaattatctaa 36523057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 27755973 - 27755899
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||   | |||||||| | ||| ||| |||||||||| |||||| ||||||||||||||||||    
T  27755973 tttcaaaatacatgttgcattcagctacgttacacatgccaatgcacaactttgacagttaatatctttaattat 27755899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 32871375 - 32871449
Alignment:
Q  84 aaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||| ||||||||||||   |||| ||||||| ||||| |||| ||||| ||||||||| |||||||||||||    
T  32871375 aaaataaatgtcaaagtcaatcactttacatatgacaatgtacaactttgatcgttaatatatttaattatctaa 32871449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 37674881 - 37674951
Alignment:
Q  84 aaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||  | ||| ||| ||||||||| |||| ||| || |||||||||||||||||||||||||    
T  37674881 aaaatacatgtcgtaatcaactatttcacatatatcaaagcataactttgaccgttaatatctttaattat 37674951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 34652062 - 34652114
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||| ||||||||||| || ||||| ||||||||| |||||||||||||    
T  34652062 acttcacacatgtcaatgcataaatttgatcgttaatatatttaattatctaa 34652114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 9445309 - 9445355
Alignment:
Q  111 acatatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    |||||||| ||||||||||||||||  ||||||||||||| ||||||    
T  9445309 acatatgtgaatgcacaattttgacatttaatatctttaaatatcta 9445355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 29052303 - 29052237
Alignment:
Q  88 tacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||  ||||| ||||| |||| |||||||| ||||| |||| || |||||||||||||||||    
T  29052303 tacatgtcgcagtcaactactacacacatgtcaatacacaactttggccattaatatctttaattat 29052237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 30446553 - 30446479
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaatta 153  Q
    ||||||||||||||||    |||| | | |||||||||| ||||||| || ||||| ||||||||||||||||||    
T  30446553 gtttcaaaatacatgttgctgtcaaccatttcacatatgccaatgcataactttgatcgttaatatctttaatta 30446479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 2570919 - 2570967
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||  ||| |||||| || |||||||||||||||||||||||||    
T  2570919 acttcacacttgttaatgcataactttgaccgttaatatctttaattat 2570967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 100657 - 100736
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  100657 gtttcaaaatacatgtccaagtcaacaacttcacatatgccaatgcacaattttgaccgttaatatctttaattatctaa 100736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 16778757 - 16778678
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16778757 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccgttaatatctttaattatctaa 16778678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 11502590 - 11502665
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  11502590 gtttcaaaatacatgtcaaagtcaaccacttcacatatgccaatgcacaattttgaccgttaatatatttaattat 11502665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 39129936 - 39130011
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  39129936 gtttcaaaatacatgtcaaagtcaactacttcacatatgccaatgcacgattttgaccgttaatatttttaattat 39130011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 20885354 - 20885276
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||| |||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  20885354 tttcaaaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgaccgttaatatctttaattatctaa 20885276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 42877639 - 42877559
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||||| |||||| | |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  42877639 tgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacagttttgaccgttgatatctttaattatctaa 42877559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 7169375 - 7169296
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| |||||| ||||| ||| |||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  7169375 gtttcaaaatatatgtcacagtcaactatttcatatatgtcaatgcacaattttgatcgttaatatctttaattatctaa 7169296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 25566558 - 25566637
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | | |||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  25566558 gtttcaaaatacatgtccaagtcaaccatttcacatatgccaatgtacaattttgaccgttaatatctttaattatctaa 25566637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 40256308 - 40256229
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| |||||||||| |||  |||||||||||||||||||||||||||||||||||||||    
T  40256308 gtttcaaaatacatgttcaagtcaactacttcacacatgcaaatgcacaattttgaccgttaatatctttaattatctaa 40256229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 6175077 - 6175007
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaa 150  Q
    ||||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6175077 tttcaaaatacatattcaagtcaactacttcacatatgtcaatgcacaattttgaccgttaatatctttaa 6175007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 32431368 - 32431446
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    ||||||||||||||||| |||||| | |||| ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  32431368 gtttcaaaatacatgtccaagtcaaccactttacatatgccaatgcacaattttgaccgttaatgtctttaattatcta 32431446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 46321161 - 46321241
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||||| || ||| | |||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  46321161 tgtttcaaaatacatgtccaaatcaaccactttacatatgctaatgcacaattttgaccgttaatatctttaattatctaa 46321241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 3851326 - 3851251
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||  ||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3851326 gtttcaaaatgtatgtctaagtcaaccacttcacatatgccaatgcacaattttgaccgttaatatctttaattat 3851251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 36623560 - 36623481
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  36623560 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 36623481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 40089928 - 40090007
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| ||| |||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  40089928 gtttcaaaatacatgtccaagtcaactatttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 40090007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 47156279 - 47156200
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  47156279 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 47156200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 48602688 - 48602609
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  48602688 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 48602609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 46103380 - 46103453
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaatt 152  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  46103380 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaatt 46103453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 23707432 - 23707512
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||| ||||||| |||  |||||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  23707432 tgttttaaaatacttgttcaagtcaaccacttcacatatgtcaatgcataattttgactgttaatatctttaattatctaa 23707512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 28061525 - 28061604
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||| ||||||| |||||    
T  28061525 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatatttaattttctaa 28061604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 38851857 - 38851936
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||| ||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  38851857 gtttcaaaatacatgtccaagtcaaccactttacatatgccaatgcataattttgactgttaatatctttaattttctaa 38851936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 41898240 - 41898161
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| ||||||   |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  41898240 gtttcaaaatacatgtccaagtcaatcacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 41898161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 7439155 - 7439076
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||| | ||||   |||||||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  7439155 gttttaaaatacatgtccaggtcaatcacttcacatataccaatgcacaattttgacagttaatatctttaattatctaa 7439076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 30342325 - 30342247
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| || ||| | |||||||| ||||||||| |||||||| |||||||||||| ||||||||||||    
T  30342325 gtttcaaaatacatgtccaaatcaaccacttcacacatgtcaatgtacaattttaaccgttaatatc-ttaattatctaa 30342247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 42890354 - 42890433
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||| |||||| | |||| ||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  42890354 gtttcaaaatatatgtccaagtcaaccactttacatatgccaatgcataattttgactgttaatatctttaattttctaa 42890433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 36585914 - 36585841
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaatt 152  Q
    ||||||||||||||||| ||||||   |||||||||||| |||  || ||||||||||||||||||||||||||    
T  36585914 gtttcaaaatacatgtccaagtcaagcacttcacatatgccaacacataattttgaccgttaatatctttaatt 36585841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 44732258 - 44732189
Alignment:
Q  85 aaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||| ||||||   |||||||| || |||||| ||||||||||||||||||||||||||||||    
T  44732258 aaatacatgtccaagtcaatcacttcacacatatcaatgtacaattttgaccgttaatatctttaattat 44732189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 21379996 - 21379917
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||| ||| || ||| | |||||||||||||||||| | |||||| || ||||||||||||||||||||||    
T  21379996 gtttgaaaatacacgtctaaatcaaccacttcacatatgtcaatgtataattttaactgttaatatctttaattatctaa 21379917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 35117377 - 35117298
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||| ||||||||||||   |||| ||||||||||||| | ||||||||| |||||||| |||||||||||||    
T  35117377 gttttaaaatatatgtcaaagtcaatcactttacatatgtcaatgtataattttgactgttaatatttttaattatctaa 35117298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 2198828 - 2198775
Alignment:
Q  105 tacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||| | |||||||||||||||||| || ||||||||||||||||||||||    
T  2198828 tacttcagaaatgtcaatgcacaattttaactgttaatatctttaattatctaa 2198775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 41950843 - 41950790
Alignment:
Q  76 tatgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaat 129  Q
    ||||||| ||||||||| || |||||| ||||||||||||||||||||||||||    
T  41950843 tatgtttgaaaatacatatccaagtcaactacttcacatatgtcaatgcacaat 41950790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 41134497 - 41134577
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||| |||||||||||  |||| | | |||||||| |||  |||| ||||||||||| ||||||||||||||||||||||    
T  41134497 tgttttaaaatacatgttcaagttaaccacttcacacatgataatgtacaattttgactgttaatatctttaattatctaa 41134577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 41088799 - 41088760
Alignment:
Q  119 caatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  41088799 caatgcacaattttgaccgttaatatatttaattatctaa 41088760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 5788388 - 5788462
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||| || ||| | | || |||||||  |||| ||||||||||| ||||||||||||||||||    
T  5788388 tttcaaaatacatgtccaaatcaaccattttacatatgctaatgtacaattttgactgttaatatctttaattat 5788462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 26161824 - 26161774
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatct 156  Q
    |||||||| |||||||||||||| ||||||||||||||| || ||||||||    
T  26161824 acttcacacatgtcaatgcacaactttgaccgttaatattttcaattatct 26161774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 33010408 - 33010370
Alignment:
Q  119 caatgcacaattttgaccgttaatatctttaattatcta 157  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  33010408 caatgcacaaatttgacctttaatatctttaattatcta 33010370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 36341831 - 36341793
Alignment:
Q  120 aatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  36341831 aatgcataattttgactgttaatatctttaattatctaa 36341793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 36516091 - 36516022
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatcttt 148  Q
    ||||| |||||||||||| ||||| | ||||| || ||| |||| ||||| ||||||| |||||||||||    
T  36516091 gtttctaaatacatgtcagagtcaaccacttcgcacatgccaatacacaactttgaccattaatatcttt 36516022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 44018887 - 44018940
Alignment:
Q  104 ctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    |||||||||| ||||| || ||||||||||||| ||||||| | ||||||||||    
T  44018887 ctacttcacacatgtctatacacaattttgaccattaatatatctaattatcta 44018940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 7880601 - 7880645
Alignment:
Q  113 atatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    |||| |||||||||| |||||||| | ||||||||||||||||||    
T  7880601 atatatcaatgcacagttttgaccttcaatatctttaattatcta 7880645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 33607624 - 33607545
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33607624 gtttcaaaatacatgtccaagttaactacttcacatatgtcaatgcacaattttgatcgttaatatctttaattatctaa 33607545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 36719334 - 36719413
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||  | |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36719334 gttttaaaatacatgttcaggtcaaccacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 36719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 44365409 - 44365330
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| ||||||   |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  44365409 gtttcaaaatacatgtccaagtcaatcacttcacatatgccaatgcataattttgaccgttaatatctttaattatctaa 44365330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 9172157 - 9172235
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||| |||||| | |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||    
T  9172157 tttcaaaatacatgtccaagtcaaccacttcacacatgccaatgtacaattttgaccgttaatatctttaattatctaa 9172235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 2182970 - 2183049
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  || ||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  2182970 gtttcaaaatacatgttcaaatcaacaacttcacatatgccaatgcacaattttgactgttaatatctttaattatctaa 2183049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 5405248 - 5405169
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  5405248 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 5405169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 7608301 - 7608222
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  7608301 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 7608222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 11841603 - 11841682
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| ||||||   ||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  11841603 gtttcaaaatacatgtccaagtcaatcacttcacatatgctaatgcataattttgaccgttaatatctttaattatctaa 11841682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 19141076 - 19141155
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  19141076 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 19141155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 36072425 - 36072347
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||| ||||||   |||||||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  36072425 tttcaaaatacatgtccaagtcaatcacttcacatatgacaatgcacaattttgactgttaatatctttagttatctaa 36072347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 39358369 - 39358308
Alignment:
Q  97 aagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  39358369 aagtcaactacttcacatatgccaatgcacaattttgaccgttaatatatttaattatctaa 39358308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 8042032 - 8042111
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||| |||||| | |||||||||||||||||| | ||||||||| |||||||||||||||| |||||    
T  8042032 gtttcaaaatatatgtccaagtcaaccacttcacatatgtcaatgtataattttgactgttaatatctttaattttctaa 8042111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 13125155 - 13125230
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||||||| ||||||   |||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  13125155 gtttcaaaatacatgtccaagtcaatcacttcacatatgccaatgtacaattttgatcgttaatatctttaattat 13125230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 32774844 - 32774767
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatct 156  Q
    ||||||||||||||||| |||||| | | || |||||| ||||||| ||| |||||||||||||||||||||||||||    
T  32774844 gtttcaaaatacatgtccaagtcaaccattttacatatatcaatgcgcaactttgaccgttaatatctttaattatct 32774767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 36177590 - 36177669
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||||| ||||| | |||||||| || ||||||||||| ||||||  |||||||||| ||||||||||    
T  36177590 gtttcaaaatacatgtcacagtcaaccacttcacacatatcaatgcacaactttgacttttaatatcttcaattatctaa 36177669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 7800098 - 7800020
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||   |||| | |||||||| ||| | |||||||| |||||||||||||||||||||||||||||    
T  7800098 tttcaaaatacatgtcgttgtcaaccacttcacacatgcctatgcacaactttgaccgttaatatctttaattatctaa 7800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 19165819 - 19165867
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  19165819 acttcacatatgtcgatgcacaactttgaccgttaatatctttaattat 19165867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 33228455 - 33228533
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    ||||||||||| ||||   ||||| | |||||||| |||||||||||||| ||||| ||||||||| ||||||||||||    
T  33228455 gtttcaaaatatatgttgcagtcaaccacttcacacatgtcaatgcacaactttgatcgttaatatatttaattatcta 33228533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 44645096 - 44645048
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||||    
T  44645096 acttcacatatgtcaatacacaattttgactgttaatatttttaattat 44645048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 13598978 - 13598935
Alignment:
Q  115 atgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||| |||||||||||| |||||||||||||||||||||    
T  13598978 atgtcaatgtacaattttgaccattaatatctttaattatctaa 13598935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 6223291 - 6223239
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| ||||||||||||||| ||||||||  |||||||||||||||| |||||    
T  6223291 actttacatatgtcaatgcataattttgattgttaatatctttaattttctaa 6223239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 24093083 - 24093154
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaa 150  Q
    |||||||||||||||||  ||||| | |||||||| |||||||| ||||| ||||   ||||||||||||||    
T  24093083 gtttcaaaatacatgtcgtagtcaaccacttcacacatgtcaattcacaactttgtatgttaatatctttaa 24093154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 32887131 - 32887080
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    ||||||||||||||||| |||||  ||||  |||||||||||||||||||||    
T  32887131 acttcacatatgtcaatacacaacgttgattgttaatatctttaattatcta 32887080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 11931918 - 11931844
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaatt 152  Q
    ||||||||||||||||||  ||||| | ||| || | ||| |||| ||||| ||||||| |||||||||||||||    
T  11931918 tgtttcaaaatacatgtcgcagtcaaccactgcaaacatgccaatacacaactttgaccattaatatctttaatt 11931844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 13443182 - 13443108
Alignment:
Q  84 aaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||| ||||| || ||| |||||||| |||||| |||| |||||||| |  |||||||| |||||||||||||    
T  13443182 aaaatatatgtcgaactcaactacttcatatatgttaatgtacaattttaattgttaatatatttaattatctaa 13443108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 67780 - 67856
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatc 155  Q
    ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  67780 gtttcaaaatacatgtctaagtcaaccacttcacatatgccaatgcacaattttgaccgttaatatctttaattatc 67856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 21540638 - 21540718
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||||| |||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  21540638 tgtttcaaaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgaccgttaatatctttaattatctaa 21540718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 18668698 - 18668777
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  18668698 gtttcaaaatacatgtccaagtcaaccacttcatatatgccaatgcacaattttgaccgttaatatctttaattatctaa 18668777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 20226308 - 20226383
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  20226308 gtttcaaaatacatgtcaaagtcaaccacttcacatatgccaatgcacaatttttaccgttaatatctttaattat 20226383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 22120292 - 22120367
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  22120292 gtttcaaaatacatgtcaaagtcaaccacttcacatatgccaatgcacaatttttaccgttaatatctttaattat 22120367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 32672068 - 32671991
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatct 156  Q
    ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  32672068 gtttcaaaatacatgtccaagtcaacaacttcacatatgccaatgcacaattttgatcgttaatatctttaattatct 32671991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 20437027 - 20437103
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatc 155  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  20437027 gtttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcataattttaaccgttaatatctttaattatc 20437103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 22055024 - 22054945
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| ||||||   |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  22055024 gtttcaaaatacatgtccaagtcaatcacttcacatatgccaatgcataattttgaccgttaatatctttaattatctaa 22054945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 17213801 - 17213881
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||| ||| |||||| | | |||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  17213801 tgtttcaaaatacacgtctaagtcaaccatttcacatatgccaatgcacaattttaaccgttaatatctttaattatctaa 17213881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 4148183 - 4148104
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||  ||||||||||||||||||||||    
T  4148183 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgattgttaatatctttaattatctaa 4148104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 24623951 - 24624030
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  24623951 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 24624030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 24955408 - 24955485
Alignment:
Q  81 ttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||| |||||| | | ||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  24955408 ttcaaaatacatgtccaagtcaacaatttcacatatatcaatgcacaattttgactattaatatctttaattatctaa 24955485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 28477978 - 28477926
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28477978 acttcacatatgtcaatgcacaactttgaccgttaatatctttaattatctaa 28477926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 29790431 - 29790379
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29790431 acttcacatatgtcaatgcacaactttgaccgttaatatctttaattatctaa 29790379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 1041076 - 1040997
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||| ||| |||||| | |||| |||||||||||||||||||||  ||||||||||| |||||||||||||    
T  1041076 gtttcaaaatacacgtccaagtcaaccactttacatatgtcaatgcacaatttcaaccgttaatatatttaattatctaa 1040997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 12226227 - 12226148
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||| |||||| | |||||||| ||| |||| ||||||||||| |||||||||||||||||||||||    
T  12226227 gttttaaaatacatgtccaagtcaaccacttcacacatgccaatacacaattttgatcgttaatatctttaattatctaa 12226148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 19087968 - 19088047
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| |  ||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  19087968 gtttcaaaatacatgtccaagtcaaccgcttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 19088047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 32414689 - 32414768
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  32414689 gtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 32414768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 2360243 - 2360167
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||||||||| ||||| | ||| |||| ||| |||| ||||| |||||||||||||||||||||||||    
T  2360243 tgtttcaaaatacatgtcacagtcaaccactacacacatgacaatacacaactttgaccgttaatatctttaattat 2360167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 6563478 - 6563399
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||| |||||| | |||||||||||| ||||||| | ||||||| |||||||||||||||| |||||    
T  6563478 gtttcaaaatatatgtctaagtcaaccacttcacatatgccaatgcatatttttgactgttaatatctttaattttctaa 6563399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 17257661 - 17257740
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||| ||| |||||| | ||||||| |||| |||||  |||||||||| ||||||||||||||||||||||    
T  17257661 gtttcaaaatacaagtccaagtcaaccacttcacgtatgccaatgttcaattttgactgttaatatctttaattatctaa 17257740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 29694136 - 29694056
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||||  |||||   ||||||||||||||| |||| || ||||||| ||||||| |||||||||||||    
T  29694136 tgtttcaaaatacatgtcgtagtcaatcacttcacatatgtcagtgcataactttgaccattaatatatttaattatctaa 29694056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 3989275 - 3989353
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    |||||||||||||||||| || |||   |||||| ||||||||||  |||||||||| ||||||||||||||||||||||    
T  3989275 tgtttcaaaatacatgtccaaatcaatcacttcatatatgtcaata-acaattttgatcgttaatatctttaattatcta 3989353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 10520687 - 10520641
Alignment:
Q  112 catatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  10520687 catatgccaatgcacaatttggaccgttaatatctttaattatctaa 10520641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 31869984 - 31869913
Alignment:
Q  83 caaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||| ||||| | ||  |||| |||||||| ||||||||||||  |||||||||||||||||    
T  31869984 caaaatacatgtcagagtcatccaccacacacatgtcaatacacaattttgactattaatatctttaattat 31869913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 32530227 - 32530191
Alignment:
Q  118 tcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||||||||||||||||| |||||||||    
T  32530227 tcaatgcacaattttgaccgttaatatttttaattat 32530191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 25475869 - 25475902
Alignment:
Q  125 acaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||||||||||||||||||||    
T  25475869 acaattttgactgttaatatctttaattatctaa 25475902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 31568833 - 31568878
Alignment:
Q  113 atatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||| ||||| | ||||||||| ||||||||||||||||||||||    
T  31568833 atatgccaatgtataattttgactgttaatatctttaattatctaa 31568878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 18094091 - 18094170
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | | |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18094091 gtttcaaaatacatgtccaagtcaaccatttcacatatgacaatgcacaattttgaccgttaatatctttaattatctaa 18094170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 27109940 - 27109861
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27109940 gttttaaaatacatgttcaagtcaaccacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 27109861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 11251362 - 11251287
Alignment:
Q  83 caaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||| |||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  11251362 caaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccgtcaatatctttaattatctaa 11251287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 40156453 - 40156371
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttca--catatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||||| |||||| | |||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  40156453 tgtttcaaaatacatgtccaagtcaaccacttaattcatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 40156371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 978329 - 978250
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  978329 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 978250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 14634167 - 14634246
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  14634167 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 14634246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 33387471 - 33387392
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  33387471 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 33387392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 9502637 - 9502710
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaatt 152  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  9502637 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaatt 9502710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 30354880 - 30354957
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatct 156  Q
    |||||||||||||| |  |||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  30354880 gtttcaaaatacatatttaagtcaacaacttcacatatgtcaatgcacaattttgactgttaatatatttaattatct 30354957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 7224417 - 7224338
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||| ||||||| | ||||   |||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  7224417 gtttcaaaacacatgtccaggtcaatcacttcacatatgccaatgcacaatttttaccgttaatatctttaattatctaa 7224338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 34112209 - 34112130
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||  |||||| | |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  34112209 gttttaaaatacatgttcaagtcaaccacttcacacatgtcaatgtacaattttgacggttaatatctttaattatctaa 34112130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 12446878 - 12446952
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||| ||||| ||||||   ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  12446878 tttcaaaatatatgtccaagtcaatcacttcacatatgtcaatgcacaattttgaccattaacatctttaattat 12446952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 33587479 - 33587558
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||| ||||||   |||||||| ||| |||||||||||||| || ||||||||||||||||||||||    
T  33587479 gttttaaaatacatgtctaagtcaatcacttcacacatgccaatgcacaatttttactgttaatatctttaattatctaa 33587558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 8086041 - 8086119
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | |||||||||||| ||||||| || |||||| |||||||||||||||| |||||    
T  8086041 gtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataa-tttgactgttaatatctttaattttctaa 8086119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 11785736 - 11785815
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||| |||| | | | || | ||||||||||||||||||||||| |||||||| |||||||||||||    
T  11785736 gttttaaaatacatgtccaagttaaccattttaaatatgtcaatgcacaattttgactgttaatatatttaattatctaa 11785815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 7002517 - 7002597
Alignment:
Q  78 tgtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||||  | ||| | |||||| | |||||||||||||| ||||| |||| |||| |||||||||||||    
T  7002517 tgtttcaaaatacatgtcgcattcaaccacttcataaatgtcaatgcacaactttgatcgttgatatatttaattatctaa 7002597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 18598757 - 18598705
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||| ||||||||| |||| |||||||||||||||||| ||||||||||    
T  18598757 acttcacacatgtcaatgtacaactttgaccgttaatatcttaaattatctaa 18598705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 38916263 - 38916342
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| |||||  | ||| | |||||||| ||| ||||||||||  |||||||||||||| |||||||||||||    
T  38916263 gtttcaaaatatatgtcgcaatcaaccacttcacacatgccaatgcacaaccttgaccgttaatatatttaattatctaa 38916342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 3472288 - 3472366
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||  |||||| | |||| | ||| || |||| | ||||||||| ||||||||||||||||||||||    
T  3472288 tttcaaaatacatgttcaagtcaaccactttatataggttaatgtataattttgactgttaatatctttaattatctaa 3472366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 12007518 - 12007586
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatcttt 148  Q
    |||||||||||||||||  || | |||||||| | ||| |||||||||| |||||||||| ||||||||    
T  12007518 tttcaaaatacatgtcattgttaactacttcatacatgccaatgcacaactttgaccgttcatatcttt 12007586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 27579467 - 27579519
Alignment:
Q  106 acttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||  |||||||||| || ||||| |||||||||||||||||||||||    
T  27579467 acttcacacttgtcaatgcataactttgatcgttaatatctttaattatctaa 27579519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 9050632 - 9050661
Alignment:
Q  125 acaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||||||||||||||||||||    
T  9050632 acaattttgaccgttaatatctttaattat 9050661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 25171405 - 25171326
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||||||||||| |  ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  25171405 gtttcaaaatacatgtcaaagtcaaccccttcacatatgccaatacacaattttgaccgttaatatctttaattatctaa 25171326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 36399350 - 36399273
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatct 156  Q
    ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  36399350 gtttcaaaatacatgtccaagtcaacaacttcacatatgccaatgcacaattttgatcgttaatatctttaattatct 36399273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 30003786 - 30003706
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatat-ctttaattatctaa 158  Q
    ||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  30003786 gtttcaaaatacatgtcaaagtcaatcacttcacatatgtcaatgtacaattttgaccgttaatatcctttaattatctaa 30003706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 40771782 - 40771858
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatc 155  Q
    ||||||||||||||||| |||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40771782 gtttcaaaatacatgtccaagtcaaccacttcacatatggcaatgctcaattttgaccgttaatatctttaattatc 40771858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 9342655 - 9342734
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||  |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9342655 gtttcaaaatatatgttcaagtcaaccacttcacatatgccaatgcacaattttgaccgttaatatctttaattatctaa 9342734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 17306206 - 17306127
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  17306206 gtttcaaaatacatgtccaagtcaactacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 17306127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 27292892 - 27292813
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||||||||||||| | ||||||||||||  |||||| |||||||||||||||||| |||||||||||||    
T  27292892 gtttcaaaatacatgtcaaagtcaaccacttcacatatgctaatgcataattttgaccgttaatatatttaattatctaa 27292813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 40977498 - 40977577
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  40977498 gtttcaaaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgactgttaatatctttaattatctaa 40977577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 52024278 - 52024201
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatct 156  Q
    ||||||||||||||||| |||||| | |||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  52024278 gtttcaaaatacatgtccaagtcaacaacttcacatataccaatgcacaattttgatcgttaatatctttaattatct 52024201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 6402420 - 6402499
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  6402420 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 6402499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 11641077 - 11641156
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  11641077 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 11641156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 36757496 - 36757575
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  36757496 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgactgttaatatctttaattttctaa 36757575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 42367306 - 42367385
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||||| || ||||||   ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  42367306 gtttcaaaatacatatccaagtcaatcacttcacatatgctaatgcacaattttgaccgttaatatctttaattatctaa 42367385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 30701970 - 30701893
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatct 156  Q
    |||| |||||||||||| |||||| | | ||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  30701970 gttttaaaatacatgtccaagtcaacaaattcacatatgtcaatgcacaattttgatcgttaatatttttaattatct 30701893  T

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Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 16120449 - 16120528
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | |||||||||||| |||||||||| |||| | ||||||||||||||||||||||    
T  16120449 gtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcacaactttgcctgttaatatctttaattatctaa 16120528  T

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Target: chr1; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 42788558 - 42788631
Alignment:
Q  84 aaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  42788558 aaaatacatgttcaagacaactacttcacatatgtcaatgcacaattttgaccgttaatat-attaattatctaa 42788631  T

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Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 4302349 - 4302288
Alignment:
Q  97 aagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||| |||||||||||||| |||||||||||||| | |||||||||||||||||||||||    
T  4302349 aagtcaactacttcacatatgccaatgcacaattttaatcgttaatatctttaattatctaa 4302288  T

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Target: chr1; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 6766621 - 6766542
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | ||||||||||||  |||||| ||||||||| |||||||||||||||| |||||    
T  6766621 gtttcaaaatacatgtttaagtcaaccacttcacatatgctaatgcataattttgacagttaatatctttaattttctaa 6766542  T

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Target: chr1; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 15912348 - 15912426
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||||||||| |||||| |||||| | |||||||||||| |||||||||||||| |||| |||||| |||||||||||||    
T  15912348 gtttcaaaatgcatgtccaagtcaaccacttcacatatgccaatgcacaattttaaccg-taatatatttaattatctaa 15912426  T

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Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 38153316 - 38153366
Alignment:
Q  108 ttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  38153316 ttcacatatgtaaatgcacaactttgaccgttaatatctttaattatctaa 38153366  T

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Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 42735176 - 42735250
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    |||||||||||||||| ||||||   ||| |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  42735176 tttcaaaatacatgtccaagtcaatcactacacacatgccaatgtacaattttgaccgttaatatctttaattat 42735250  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 7568507 - 7568586
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||| |  ||| ||||| ||| ||||||  |||||||||| ||||||||| | ||| ||||||||||||||||    
T  7568507 gtttcaaaatatacatcacagtcaactatttcacacgtgtcaatgcataattttgacggctaaaatctttaattatctaa 7568586  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 22575597 - 22575668
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaa 150  Q
    |||||||||||||||||  ||||| | |   |||||||| |||| ||||||||||||| |||||||||||||    
T  22575597 gtttcaaaatacatgtcgcagtcaaccatcacacatatgccaatacacaattttgaccattaatatctttaa 22575668  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 26910284 - 26910249
Alignment:
Q  123 gcacaattttgaccgttaatatctttaattatctaa 158  Q
    |||| |||||||||||||||||||||||||||||||    
T  26910284 gcactattttgaccgttaatatctttaattatctaa 26910249  T

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Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 44647759 - 44647794
Alignment:
Q  115 atgtcaatgcacaattttgaccgttaatatctttaa 150  Q
    |||||||||||||| |||||||||||||||||||||    
T  44647759 atgtcaatgcacaactttgaccgttaatatctttaa 44647794  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 50972643 - 50972721
Alignment:
Q  80 tttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||  ||||||||| ||| | || || |||||||||  ||||||| |||||||||||||    
T  50972643 tttcaaaatacatgtcgcagtcaattacttcacacatgccgattcaaaattttgactcttaatatttttaattatctaa 50972721  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 16690040 - 16689996
Alignment:
Q  113 atatgtcaatgcacaattttgaccgttaatatctttaattatcta 157  Q
    |||||||||||||||  ||||||| ||| ||||||||||||||||    
T  16690040 atatgtcaatgcacatctttgaccattagtatctttaattatcta 16689996  T

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Target: scaffold0003 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 161847 - 161926
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaa 158  Q
    ||||||||||||||||  |||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  161847 gtttcaaaatacatgttcaagtcaaccactttacatatgtcaatgcacaattttgactgttaatatctttaattatctaa 161926  T

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Target: scaffold0056 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 71212 - 71143
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatcttt 148  Q
    ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||| ||||| |||||||    
T  71212 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttgatcgttattatcttt 71143  T

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Target: scaffold0295 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 13727 - 13802
Alignment:
Q  79 gtttcaaaatacatgtcaaagtcagctacttcacatatgtcaatgcacaattttgaccgttaatatctttaattat 154  Q
    ||||||||||||||||  |||||| | |||| ||||||||||||||| ||||||||| | ||||||| ||||||||    
T  13727 gtttcaaaatacatgttcaagtcaaccactttacatatgtcaatgcaaaattttgactgctaatatcgttaattat 13802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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