View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_high_31 (Length: 364)
Name: NF18339_high_31
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 32 - 345
Target Start/End: Original strand, 42039182 - 42039502
Alignment:
| Q |
32 |
atattctaaagtgacaaataatacgaatcaataaaatatttcataacaaattttgatacaatgtttgttcatttctctaagagtttggctaattggaagt |
131 |
Q |
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| T |
42039182 |
atattctaaagtgacaaataaaacgaatcaataaaatatttcataacaaattttgatacaatgtttgttcatttctctaagagtttggctaattggaagt |
42039281 |
T |
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| Q |
132 |
gaatgagtattaatttt-------gactatatgttaatgcagaaaattgtataccagaaagtgttgtggcatcaatcacccatgatatattcatcaatgg |
224 |
Q |
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| T |
42039282 |
gaacgagtattaattttgatttttgactatatgttaatgcagaaaattgtataccagaaagtgttgtggcatcaatcacccatgatatattcatcaatgg |
42039381 |
T |
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| Q |
225 |
atgtcaagttaacttcaagatagatggaattcatgatgttgagataagcactctatatcctggtgaatcattcaggagcttggaggattgctttgagagc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039382 |
atgtcaagttaacttcaagatagatggaattcatgatgttgagataagcactctatatcctggtgaatcattcaggagcttggaggattgctttgagagc |
42039481 |
T |
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| Q |
325 |
tttgttgccatggcggccgac |
345 |
Q |
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||||||||||||||||||||| |
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| T |
42039482 |
tttgttgccatggcggccgac |
42039502 |
T |
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