View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_high_34 (Length: 336)
Name: NF18339_high_34
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 42314116 - 42313812
Alignment:
| Q |
17 |
aaggtgccacgttcgaaacagttccaaaataaggaccagaatttccagcagaagcaactactactataccatttgctactgcatgaaaggaacctgtaga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42314116 |
aaggtgccacgttcgaaacagttccaaaataaggaccagaatttccagcagaagcaactactactataccatttgctactgcatgaaaggaacctataga |
42314017 |
T |
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| Q |
117 |
tattgaatctgtaaaaaggttatgagtcttcataccaagagaaactgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42314016 |
tattgaatctgtaaaaaggttatgagtcttcataccaagagaaactgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatct |
42313917 |
T |
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| Q |
217 |
gcatctgagcagccacctttccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313916 |
gcatctgagcagccacctttccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactta |
42313817 |
T |
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| Q |
317 |
ctcct |
321 |
Q |
| |
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||||| |
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| T |
42313816 |
ctcct |
42313812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 23040754 - 23040693
Alignment:
| Q |
160 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
221 |
Q |
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| T |
23040754 |
actgaaagtacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatc |
23040693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 42734790 - 42734729
Alignment:
| Q |
160 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
221 |
Q |
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| T |
42734790 |
actgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
42734729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 42762710 - 42762750
Alignment:
| Q |
166 |
agcacatcaacaccgtcacttatggcagcttcaaaaccagc |
206 |
Q |
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| T |
42762710 |
agcacatcaacaccatcacttatggcagcttcaaaaccagc |
42762750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 42717095 - 42717156
Alignment:
| Q |
160 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
221 |
Q |
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||||| ||||| || ||||| |||||||||||||||||||||||||| || | ||||||||| |
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| T |
42717095 |
actgaaagcacgtcgacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
42717156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 315
Target Start/End: Original strand, 42743720 - 42743875
Alignment:
| Q |
160 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaa |
259 |
Q |
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| T |
42743720 |
actgaaagcacgtcgacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaa |
42743819 |
T |
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| Q |
260 |
catgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactt |
315 |
Q |
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| T |
42743820 |
ctcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacactt |
42743875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 315
Target Start/End: Original strand, 42753079 - 42753234
Alignment:
| Q |
160 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaa |
259 |
Q |
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| T |
42753079 |
actgaaagcacgtcgacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaa |
42753178 |
T |
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| Q |
260 |
catgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactt |
315 |
Q |
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| T |
42753179 |
ctcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacactt |
42753234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 24266846 - 24266787
Alignment:
| Q |
237 |
ccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccatt |
296 |
Q |
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||||||||||||||||||||||||||| | | |||| || |||||||| ||||| ||||| |
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| T |
24266846 |
ccaacacactttgtaggctgcaacatgtgatcttggtgatccacctttagcagtaccatt |
24266787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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