View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_high_35 (Length: 333)
Name: NF18339_high_35
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 37904206 - 37904143
Alignment:
| Q |
123 |
ttggcacaaattcattcttattcaatctggaaaaatctgtttggtataaagtttgaaacagatt |
186 |
Q |
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| T |
37904206 |
ttggcacaaattccttcttattcaatctggaaaaatctgtttggtctaaagtttgaaacagatt |
37904143 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 56558094 - 56558023
Alignment:
| Q |
199 |
ttcatattcctagtttttggaagaaaaagcaaattagggtataacttttgatgttatagataaatagtggat |
270 |
Q |
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| T |
56558094 |
ttcatattcctagtttttgggagaaaaggcaaattagggtttaacttttgatgttagagataaacagtggat |
56558023 |
T |
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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1830319 - 1830221
Alignment:
| Q |
1 |
acccagccatctggccaaaatgatgaaagtgattcctattcccagatggagcgacaaaggataagtgaagccactgcaaaaccgcaaaccacacgttgc |
99 |
Q |
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| T |
1830319 |
acccagtcatatgtccaaattgataaaagtgattcctactccaggatggagcgataaaggataagtgaagccattgcaaaaccgcagaccaaacgttgc |
1830221 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19520816 - 19520895
Alignment:
| Q |
1 |
acccagccatctggccaaaatgatgaaagtgattcctattcccagatggagcgacaaaggataagtgaagccactgcaaa |
80 |
Q |
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| T |
19520816 |
acccaaccatctgaccaaactgaagaaagtgattcctactcccagctggagcgacaaaggataaacgaagccactgcaaa |
19520895 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11002081 - 11001983
Alignment:
| Q |
1 |
acccagccatctggccaaaatgatgaaagtgattcctattcccagatggagcgacaaaggataagtgaagccactgcaaaaccgcaaaccacacgttgc |
99 |
Q |
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| T |
11002081 |
acccagccatctgaccaaattgacgaaaatgattcatactcccggaaggggcgacaaaggataagtgaagccacttcaaaactgtcgaccacacgttgc |
11001983 |
T |
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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 28287236 - 28287162
Alignment:
| Q |
25 |
gaaagtgattcctattcccagatggagcgacaaaggataagtgaagccactgcaaaaccgcaaaccacacgttgc |
99 |
Q |
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| T |
28287236 |
gaaagtgattcctactcccagctggagcaacgaaggataagcgaagccactgcaaaaccgcagaccacatgttgc |
28287162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 41502584 - 41502682
Alignment:
| Q |
1 |
acccagccatctggccaaaatgatgaaagtgattcctattcccagatggagcgacaaaggataagtgaagccactgcaaaaccgcaaaccacacgttgc |
99 |
Q |
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| T |
41502584 |
acccaaccatctggcgaaactgatgaaagtgattcctacttccggatggagcaataaagggtaagtaaagccactgcaagaccgcagaccatacgttgc |
41502682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 51467790 - 51467735
Alignment:
| Q |
195 |
gcgtttcatattcctagtttttggaagaaaaagcaaattagggtataacttttgat |
250 |
Q |
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| T |
51467790 |
gcgtttcatgttcccaatttttgggagaaaaaacaaattagggtataaattttgat |
51467735 |
T |
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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 44276623 - 44276719
Alignment:
| Q |
1 |
acccagccatctggccaaaatgatgaaagtgattcctattcccaga--tggagcgacaaaggataagtgaagccactgcaaaaccgcaaaccacacg |
95 |
Q |
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| T |
44276623 |
acccaaccatttggccgaactgaagaaagtgattcctactcccaaaactagagcgacaaaggataaatgaagccactgcaaaaccgcgaaccacacg |
44276719 |
T |
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