View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_high_4 (Length: 904)
Name: NF18339_high_4
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 21145052 - 21144596
Alignment:
| Q |
8 |
ggacatcatcatcactcaacaacgacaactctccccttaaatccacctcttgtacatcttcttttaacctagaaattctctcttacatcgaaccatgctc |
107 |
Q |
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| T |
21145052 |
ggacatcttcatcattcaacaacgacaactctccccttaaatccacctcttgtatatcttcttttaacctagaaattctctcttacatcgaaccatactc |
21144953 |
T |
|
| Q |
108 |
ctccttgttccactctctaagccttcctttaaccccttttagtttctcttttaacacaaatcccatccatcacgttaaatgttgtgaattccacacctcc |
207 |
Q |
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| T |
21144952 |
ctccttgttccactctctaagccttcctttaaccccttttagtttctcttttaacagaaatcccatccatcacgttaaatgttgtgaattccacacctcc |
21144853 |
T |
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| Q |
208 |
tcaaccacctctttgatttgcctattatccaaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21144852 |
tcaaccacctctttgatttgcctattatccaaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatc |
21144753 |
T |
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| Q |
308 |
caagaactcaccaaattggtctccaatctgcttgaaagcctcttcatcccagacatgaactggtaaacttaggattttaatccaaacagttattttgctg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21144752 |
caagaactcaccaaattggtctccaatctgcttgaaagcctcttcatcccagacatgaactggtaaacttaggattttaatccaaacagttcttttgctg |
21144653 |
T |
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| Q |
408 |
gccactaagcttggattccattccttcatctccctaaaatgagaatcccaccaaaat |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21144652 |
gccactaagcttggattccattccttcatctccctaaaatgagaatcccaccaaaat |
21144596 |
T |
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