View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_high_44 (Length: 288)

Name: NF18339_high_44
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_high_44
NF18339_high_44
[»] chr7 (2 HSPs)
chr7 (12-271)||(240482-240741)
chr7 (189-228)||(4587679-4587718)
[»] chr6 (3 HSPs)
chr6 (190-233)||(3634199-3634242)
chr6 (190-235)||(17352547-17352592)
chr6 (190-233)||(22259516-22259559)
[»] chr8 (2 HSPs)
chr8 (190-232)||(33053638-33053680)
chr8 (202-231)||(13109637-13109666)
[»] chr2 (4 HSPs)
chr2 (190-231)||(35406132-35406173)
chr2 (190-228)||(20515848-20515886)
chr2 (189-231)||(31000194-31000236)
chr2 (190-228)||(31483239-31483277)
[»] scaffold0211 (1 HSPs)
scaffold0211 (190-232)||(24760-24802)
[»] chr4 (3 HSPs)
chr4 (194-232)||(21823393-21823431)
chr4 (190-232)||(41635687-41635729)
chr4 (190-232)||(42454556-42454598)
[»] scaffold0003 (1 HSPs)
scaffold0003 (189-228)||(89531-89570)
[»] chr3 (2 HSPs)
chr3 (189-232)||(1085483-1085526)
chr3 (202-231)||(17132472-17132501)
[»] chr5 (2 HSPs)
chr5 (190-228)||(24308816-24308854)
chr5 (190-228)||(24364471-24364509)
[»] chr1 (1 HSPs)
chr1 (190-231)||(24115511-24115552)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 240741 - 240482
Alignment:
Q  12 agagattatagagaaaggctatgagaagccataagatgaagaaagtttgtctcaatgagaaagaagaattgtcaaatataaagaagaaatacaacaagtt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  240741 agagattatagagaaaggctatgagaagccataagatgaagaaagtttgtttcaatgagaaagaagaattgtcaaatataaagaagaaatacaacaagtt 240642  T
Q  112 gtaaccctcatccatcaatatgtgggtaattctatgtttgagaaggttgaggatgaaactatctcaaaggaagcttggtgtttaccggtatttttggtaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  240641 gtaaccctcatccatcaatatgtgggtaattctatgtttgagaaggttgaggatgaaactatcttaaaggaagcttcgtgtttaccggtatttttggtaa 240542  T
Q  212 acaataagactagttttaaatatttggtagattcaagagaaatcactctgaggcattaag 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  240541 acaataagactagttttaaatatttggtaaattcaagagaaatcactctgaggcattaag 240482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 4587679 - 4587718
Alignment:
Q  189 gtgtttaccggtatttttggtaaacaataagactagtttt 228  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  4587679 gtgtttaccggtgtttttggtaaacaatatgactagtttt 4587718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 3634199 - 3634242
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagttttaaata 233  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  3634199 tgtttaccggtgtttttggtaaacaataagactagttttaaata 3634242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 17352547 - 17352592
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagttttaaatatt 235  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||||    
T  17352547 tgtttacctgtatttttggtaaacaataggactagttttaattatt 17352592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 22259559 - 22259516
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagttttaaata 233  Q
    ||||||||| | ||||| ||||||||||||||||||||||||||    
T  22259559 tgtttaccgctgttttttgtaaacaataagactagttttaaata 22259516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 33053638 - 33053680
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagttttaaat 232  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  33053638 tgtttaccggtgtttttggtaaacaataagactagttttaaat 33053680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 13109637 - 13109666
Alignment:
Q  202 tttttggtaaacaataagactagttttaaa 231  Q
    ||||||||||||||||||||||||||||||    
T  13109637 tttttggtaaacaataagactagttttaaa 13109666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 35406173 - 35406132
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagttttaaa 231  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  35406173 tgtttaccggtttttttggtaaacaataagactagttttaaa 35406132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 20515886 - 20515848
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagtttt 228  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  20515886 tgtttaccggtgtttttggtaaacaataagactagtttt 20515848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 31000236 - 31000194
Alignment:
Q  189 gtgtttaccggtatttttggtaaacaataagactagttttaaa 231  Q
    ||||||||| || ||||||||||||||||||| ||||||||||    
T  31000236 gtgtttacctgtgtttttggtaaacaataagattagttttaaa 31000194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 31483239 - 31483277
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagtttt 228  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  31483239 tgtttgccggtatttttggtaaacaagaagactagtttt 31483277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 24760 - 24802
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagttttaaat 232  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  24760 tgtttaccgatatttttgataaacaataagactagttttaaat 24802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 21823393 - 21823431
Alignment:
Q  194 taccggtatttttggtaaacaataagactagttttaaat 232  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  21823393 taccggtgtttttggtaaacaataagactagttttaaat 21823431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 41635729 - 41635687
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagttttaaat 232  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||    
T  41635729 tgtttaccggtgtttttggaaaaccataagactagttttaaat 41635687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 42454556 - 42454598
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagttttaaat 232  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||    
T  42454556 tgtttaccggtgtttgtggtaaacaataagattagttttaaat 42454598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 89531 - 89570
Alignment:
Q  189 gtgtttaccggtatttttggtaaacaataagactagtttt 228  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  89531 gtgtttaccggtgtttttagtaaacaataagactagtttt 89570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 1085483 - 1085526
Alignment:
Q  189 gtgtttaccggtatttttggtaaacaataagactagttttaaat 232  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||    
T  1085483 gtgtttaccggtgtttttggtaaacaataaaactaattttaaat 1085526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 17132472 - 17132501
Alignment:
Q  202 tttttggtaaacaataagactagttttaaa 231  Q
    ||||||||||||||||||||||||||||||    
T  17132472 tttttggtaaacaataagactagttttaaa 17132501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 24308816 - 24308854
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagtttt 228  Q
    |||||||||||||||||||||||||| || |||||||||    
T  24308816 tgtttaccggtatttttggtaaacaagaaaactagtttt 24308854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 24364509 - 24364471
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagtttt 228  Q
    |||||||||||||||||||||||||| || |||||||||    
T  24364509 tgtttaccggtatttttggtaaacaagaaaactagtttt 24364471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 24115552 - 24115511
Alignment:
Q  190 tgtttaccggtatttttggtaaacaataagactagttttaaa 231  Q
    |||||| |||| ||||||||||||||||| ||||||||||||    
T  24115552 tgtttatcggtgtttttggtaaacaataaaactagttttaaa 24115511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University