View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_high_55 (Length: 235)
Name: NF18339_high_55
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4265958 - 4265733
Alignment:
| Q |
1 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
100 |
Q |
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| T |
4265958 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
4265859 |
T |
|
| Q |
101 |
aatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatga |
191 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
4265858 |
aataccaattgaaaatccatagtttggaaaaagagtaacttgaagagccaaaatagaagcttgatcatgagaaatattcaagttaggtaaaagatcatga |
4265759 |
T |
|
| Q |
192 |
atttgtttagctttagtaagattctt |
217 |
Q |
| |
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||||||||||||| |||||||||||| |
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| T |
4265758 |
atttgtttagcttcagtaagattctt |
4265733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4289765 - 4289990
Alignment:
| Q |
1 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289765 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
4289864 |
T |
|
| Q |
101 |
aatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatga |
191 |
Q |
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| T |
4289865 |
aataccaattgaaaatccatagtttggaaaaatggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatga |
4289964 |
T |
|
| Q |
192 |
atttgtttagctttagtaagattctt |
217 |
Q |
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|||||| |||||| || ||||||||| |
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| T |
4289965 |
atttgtgtagcttcagaaagattctt |
4289990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4260412 - 4260187
Alignment:
| Q |
1 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260412 |
ctaattcagatacttcaatttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
4260313 |
T |
|
| Q |
101 |
aatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatga |
191 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||||| |
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| T |
4260312 |
aataccaattgaaaatccatagtttggaaaaaaagtaacttgaagagccaaaaaagaagcttgatcatgagaaatattcaagttaggtaaaaaatcatga |
4260213 |
T |
|
| Q |
192 |
atttgtttagctttagtaagattctt |
217 |
Q |
| |
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|| ||| |||||| || ||||||||| |
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| T |
4260212 |
atctgtgtagcttcagaaagattctt |
4260187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 4298352 - 4298574
Alignment:
| Q |
4 |
attcagatacttcattttcaagctttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaat |
103 |
Q |
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||||||||| ||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298352 |
attcagatatttcctttccaatatttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaat |
4298451 |
T |
|
| Q |
104 |
acc---------tccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatgaatt |
194 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
4298452 |
accaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacataagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatt |
4298551 |
T |
|
| Q |
195 |
tgtttagctttagtaagattctt |
217 |
Q |
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||| |||||| || | ||||||| |
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| T |
4298552 |
tgtgtagcttcagaaggattctt |
4298574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 4285109 - 4285240
Alignment:
| Q |
75 |
ccatctaaaacagcatgatgtgaagtaatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaa |
165 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |
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| T |
4285109 |
ccatctaaaacagcatgatgtgaagtaatgcccattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
4285208 |
T |
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| Q |
166 |
tattcaagttaggtaaaagatcatgaatttgt |
197 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4285209 |
tattcaagttaggtaaaagatcatgaatttgt |
4285240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4285066 - 4285111
Alignment:
| Q |
1 |
ctaattcagatacttcattttcaagctttctacataggtaagccca |
46 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4285066 |
ctaattcagaaacttcattttcaagctttctacataggtaagccca |
4285111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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