View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_high_57 (Length: 227)

Name: NF18339_high_57
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_high_57
NF18339_high_57
[»] chr5 (2 HSPs)
chr5 (50-221)||(28525094-28525265)
chr5 (1-146)||(41889474-41889619)
[»] chr6 (15 HSPs)
chr6 (26-220)||(6589169-6589363)
chr6 (1-154)||(7119191-7119344)
chr6 (1-154)||(7131669-7131822)
chr6 (47-153)||(6402940-6403046)
chr6 (110-217)||(6416109-6416216)
chr6 (1-153)||(6585150-6585302)
chr6 (110-153)||(8913897-8913940)
chr6 (35-153)||(7994095-7994213)
chr6 (110-153)||(6594519-6594562)
chr6 (26-154)||(19632498-19632623)
chr6 (113-146)||(6432307-6432340)
chr6 (112-153)||(6395009-6395050)
chr6 (112-153)||(6426656-6426697)
chr6 (169-222)||(9411557-9411610)
chr6 (112-153)||(14820838-14820879)
[»] chr3 (3 HSPs)
chr3 (26-216)||(51764290-51764480)
chr3 (26-216)||(13470582-13470772)
chr3 (1-146)||(51113701-51113846)
[»] chr4 (9 HSPs)
chr4 (36-153)||(53761685-53761802)
chr4 (1-146)||(1600453-1600598)
chr4 (35-143)||(546981-547089)
chr4 (98-146)||(8187011-8187059)
chr4 (20-63)||(21834381-21834424)
chr4 (108-146)||(1495842-1495880)
chr4 (108-146)||(1533910-1533948)
chr4 (98-146)||(1519063-1519111)
chr4 (46-146)||(55908648-55908748)
[»] chr1 (3 HSPs)
chr1 (1-221)||(19468344-19468564)
chr1 (169-205)||(29691338-29691374)
chr1 (169-205)||(29718850-29718886)
[»] chr7 (2 HSPs)
chr7 (26-205)||(10614652-10614831)
chr7 (113-146)||(7977724-7977757)
[»] chr2 (1 HSPs)
chr2 (112-146)||(1037584-1037618)
[»] chr8 (1 HSPs)
chr8 (98-147)||(17636316-17636365)
[»] scaffold0807 (1 HSPs)
scaffold0807 (110-142)||(1388-1420)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 28525094 - 28525265
Alignment:
Q  50 actacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaacttgacaaatacctttag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28525094 actacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaacttgacaaatacatttag 28525193  T
Q  150 atatgcgcttacaacggtccaaattaagcacctccaaattggggaaaatggaagcagaccttatgatatttt 221  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  28525194 atatgtgcttacaatggtccaaattaagcacctccaaattgtggaaaatggaagcaaaccttatgatatttt 28525265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 41889619 - 41889474
Alignment:
Q  1 ttcatcatcaaccattgttcctgataagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttc 100  Q
    ||||||||||||  ||||   |||||||| ||| |||||||  || ||||||  |||||| ||| ||||| |||||| |||||||||   |  ||| |||    
T  41889619 ttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttc 41889520  T
Q  101 aaatccctcatcttacaacatctccttaaaacttgacaaatacctt 146  Q
    ||||  || || ||||||||| ||||||||||||||  ||||||||    
T  41889519 aaatatctaatgttacaacatatccttaaaacttgagtaatacctt 41889474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 6589363 - 6589169
Alignment:
Q  26 aagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctcc 125  Q
    |||| ||| ||||||||| | |||||||||||||| ||||||||| |||||| | |   ||||  |  ||| ||||||| ||| |||||||||||||| |    
T  6589363 aagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttc 6589264  T
Q  126 ttaaaacttgacaaatacctttagatatgcgcttacaacggtccaaattaagcacctccaaattggggaaaatggaagcagaccttatgatattt 220  Q
    | || ||||||||||||||||||||||||   ||||||   |  |||| ||||||||| ||||||||||||||||||||| || |||||||||||    
T  6589263 tcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatattt 6589169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 7119191 - 7119344
Alignment:
Q  1 ttcatcatcaaccattgttcctgataagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttc 100  Q
    ||||||||||||| | ||  |||| |||| ||| ||||||||||   |||| |||||||| ||||||||| |||||| | ||||||||| |  ||| |||    
T  7119191 ttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttc 7119290  T
Q  101 aaatccctcatcttacaacatctccttaaaacttgacaaatacctttagatatg 154  Q
    ||||   | |||||| |||||||||||||||||||||||||||||| |||||||    
T  7119291 aaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatg 7119344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 7131669 - 7131822
Alignment:
Q  1 ttcatcatcaaccattgttcctgataagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttc 100  Q
    ||||||||||||| | ||  |||| |||| ||| ||||||||||   |||| |||||||| ||||||||| |||||| | ||||||||| |  ||| |||    
T  7131669 ttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttc 7131768  T
Q  101 aaatccctcatcttacaacatctccttaaaacttgacaaatacctttagatatg 154  Q
    ||||   | |||||| |||||||||||||||||||||||||||||| |||||||    
T  7131769 aaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatg 7131822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 6402940 - 6403046
Alignment:
Q  47 ggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaacttgacaaatacctt 146  Q
    |||||| ||||||| ||||||||| |||||| | |||||||     |||| ||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  6402940 ggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctt 6403039  T
Q  147 tagatat 153  Q
     ||||||    
T  6403040 cagatat 6403046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 6416109 - 6416216
Alignment:
Q  110 atcttacaacatctccttaaaacttgacaaatacctttagatatgcgcttacaacggtccaaattaagcacctccaaattggggaaaatggaagcagacc 209  Q
    |||||||||||| || ||||||||||||||||||||| ||||| | | |||||||| | ||||| ||||| || ||||||||||||  |||||| | ||     
T  6416109 atcttacaacatatctttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaaca 6416208  T
Q  210 ttatgata 217  Q
    ||||||||    
T  6416209 ttatgata 6416216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6585302 - 6585150
Alignment:
Q  1 ttcatcatcaaccattgttcctgataagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttc 100  Q
    ||||||||||||| ||||  |||| |||| ||| ||||||| ||  | ||||| |||||| ||||||||| |||||| | |||||||     | || |||    
T  6585302 ttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaacacccagtaaagttc 6585203  T
Q  101 aaatccctcatcttacaacatctccttaaaacttgacaaatacctttagatat 153  Q
    |||| ||| || ||| |||||||||||||||| ||||||||||||| ||||||    
T  6585202 aaatgcctaatattaaaacatctccttaaaacatgacaaataccttcagatat 6585150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 8913940 - 8913897
Alignment:
Q  110 atcttacaacatctccttaaaacttgacaaatacctttagatat 153  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  8913940 atcttacaacatcttcttaaaacttgacaaatacctttagatat 8913897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 7994213 - 7994095
Alignment:
Q  35 acctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaactt 134  Q
    ||||| ||||| |||||||||||||| ||||| ||| |||||| | ||| ||| | |  ||  ||||||| ||| |||||||||||| |||||||||| |    
T  7994213 acctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaacgt 7994114  T
Q  135 gacaaatacctttagatat 153  Q
     ||||||||||| ||||||    
T  7994113 aacaaataccttcagatat 7994095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 6594562 - 6594519
Alignment:
Q  110 atcttacaacatctccttaaaacttgacaaatacctttagatat 153  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  6594562 atcttataacatctccttaaaacttgacaaataccttcagatat 6594519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 19632498 - 19632623
Alignment:
Q  26 aagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctcc 125  Q
    |||||||| ||||| ||||| ||||||| |||||| ||||||||| | || | |||||||||     |||| ||||||| | | ||||||||||||||      
T  19632498 aagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttcaaatgcgttatcttacaacatct-- 19632595  T
Q  126 ttaaaacttgacaaatacctttagatatg 154  Q
     |||||||||||||||| | |||||||||    
T  19632596 -taaaacttgacaaatagcattagatatg 19632623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 6432307 - 6432340
Alignment:
Q  113 ttacaacatctccttaaaacttgacaaatacctt 146  Q
    ||||||||||||||||||||||||||||||||||    
T  6432307 ttacaacatctccttaaaacttgacaaatacctt 6432340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 6395009 - 6395050
Alignment:
Q  112 cttacaacatctccttaaaacttgacaaatacctttagatat 153  Q
    |||||||||| || ||||||||||||||||||||| ||||||    
T  6395009 cttacaacatttctttaaaacttgacaaataccttcagatat 6395050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 6426656 - 6426697
Alignment:
Q  112 cttacaacatctccttaaaacttgacaaatacctttagatat 153  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  6426656 cttacaacatttccttaaaacttcacaaataccttcagatat 6426697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 9411557 - 9411610
Alignment:
Q  169 caaattaagcacctccaaattggggaaaatggaagcagaccttatgatattttt 222  Q
    ||||| ||||| || |||||||||||||||||||||| ||||| |||| |||||    
T  9411557 caaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgttttt 9411610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 14820838 - 14820879
Alignment:
Q  112 cttacaacatctccttaaaacttgacaaatacctttagatat 153  Q
    |||||||||| |||||||| ||||||||||||||| ||||||    
T  14820838 cttacaacatttccttaaaccttgacaaataccttcagatat 14820879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 51764480 - 51764290
Alignment:
Q  26 aagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctcc 125  Q
    ||||| || ||||||||||| |||||| ||||||| ||||||||| |||||| | ||||||| | |  ||  ||||||| ||| |||||| |||||||||    
T  51764480 aagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaacatctcc 51764381  T
Q  126 ttaaaacttgacaaatacctttagatatgcgcttacaacggtccaaattaagcacctccaaattggggaaaatggaagcagaccttatgat 216  Q
    ||||||||| ||| | ||||||||||||||| || |||   |  |||| ||||| || |||||||||||||||||||||| || |||||||    
T  51764380 ttaaaacttcacagacacctttagatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgat 51764290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 13470772 - 13470582
Alignment:
Q  26 aagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctcc 125  Q
    |||| ||| |||||||| || ||||| |||||||| ||||||||| |||||| | ||  ||| | |  ||| ||||||| ||| |||||||||||| |||    
T  13470772 aagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatcc 13470673  T
Q  126 ttaaaacttgacaaatacctttagatatgcgcttacaacggtccaaattaagcacctccaaattggggaaaatggaagcagaccttatgat 216  Q
    |||||||||||||||||||||| |||| | | || ||||  | ||||| ||||| || ||||||||||||| |||||||| || |||||||    
T  13470672 ttaaaacttgacaaataccttttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatgat 13470582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 51113846 - 51113701
Alignment:
Q  1 ttcatcatcaaccattgttcctgataagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttc 100  Q
    ||||||||||||||||||   ||| ||||| || |||||||| || ||| || ||||||| ||||||||| |||||| | |||||||||    |||||||    
T  51113846 ttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttc 51113747  T
Q  101 aaatccctcatcttacaacatctccttaaaacttgacaaatacctt 146  Q
    |||| ||| || |||||||||||| |||||||||||||||||||||    
T  51113746 aaatgcctaattttacaacatctctttaaaacttgacaaatacctt 51113701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 53761802 - 53761685
Alignment:
Q  36 cctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaacttg 135  Q
    |||| ||||| |||||||||||||| ||||||| | |||||| | ||||||| | |  ||| ||||||| ||| || |||||||||||||||||||||||    
T  53761802 cctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatctccttaaaacttg 53761703  T
Q  136 acaaatacctttagatat 153  Q
    ||||||||||||||||||    
T  53761702 acaaatacctttagatat 53761685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 1600453 - 1600598
Alignment:
Q  1 ttcatcatcaaccattgttcctgataagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttc 100  Q
    |||||| |||||| ||||   ||| |||| ||| |||||||| ||| ||||| ||||||| |||||  |  |||||||||||||||| | |  ||| |||    
T  1600453 ttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttc 1600552  T
Q  101 aaatccctcatcttacaacatctccttaaaacttgacaaatacctt 146  Q
    ||||  || || ||| || |||||||||||||||||||||||||||    
T  1600553 aaatgtctaattttagaaaatctccttaaaacttgacaaatacctt 1600598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 546981 - 547089
Alignment:
Q  35 acctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaactt 134  Q
    |||||||  ||||||||| ||||||| ||||||| | | |||| || | |||| |||  ||| ||||||| ||| ||||||||||||||||||||||| |    
T  546981 acctccaatttaggaacttcaaagttcattccaaataggttcactactaaacaattggataagttcaaatgccttatcttacaacatctccttaaaacat 547080  T
Q  135 gacaaatac 143  Q
     ||||||||    
T  547081 cacaaatac 547089  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 8187059 - 8187011
Alignment:
Q  98 ttcaaatccctcatcttacaacatctccttaaaacttgacaaatacctt 146  Q
    ||||||||||| |||| |||||||||| | |||||||||||||||||||    
T  8187059 ttcaaatccctaatctcacaacatctcttcaaaacttgacaaatacctt 8187011  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 21834424 - 21834381
Alignment:
Q  20 cctgataagtccaagacctccagcttaggaactacaaagttgat 63  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||    
T  21834424 cctgacaagtccaacacctccagcttgggaactacaaagttgat 21834381  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 1495880 - 1495842
Alignment:
Q  108 tcatcttacaacatctccttaaaacttgacaaatacctt 146  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  1495880 tcatcttacaacatctccttaaaacatgaccaatacctt 1495842  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 1533948 - 1533910
Alignment:
Q  108 tcatcttacaacatctccttaaaacttgacaaatacctt 146  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  1533948 tcatcttacaacatctccttaaaacatgactaatacctt 1533910  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 1519111 - 1519063
Alignment:
Q  98 ttcaaatccctcatcttacaacatctccttaaaacttgacaaatacctt 146  Q
    ||||||| ||| ||| | |||||||| ||||||||||||||||||||||    
T  1519111 ttcaaatgcctaatccttcaacatcttcttaaaacttgacaaatacctt 1519063  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 55908748 - 55908648
Alignment:
Q  46 aggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaacttgacaaatacct 145  Q
    |||||||  |||||| |||| |||| | |||| | ||||||||| |  ||| |||||||  || | ||||||||||||||||| ||||| ||||||||||    
T  55908748 aggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaatacct 55908649  T
Q  146 t 146  Q
    |    
T  55908648 t 55908648  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19468564 - 19468344
Alignment:
Q  1 ttcatcatcaaccattgttcctgataagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttc 100  Q
    ||||||||||||| ||||  |||| || | ||| ||||||||||| |||||||||||||| | ||||||| | |||| | ||||||||| |  ||| ||     
T  19468564 ttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaagttt 19468465  T
Q  101 aaatccctcatcttacaacatctccttaaaacttgacaaatacctttagatatgcgcttacaacggtccaaattaagcacctccaaattggggaaaatgg 200  Q
    |||| ||| || ||| |||| |||||||||||||||||||| ||||  |||||| | || ||   || ||||| ||||| || ||||||||| |||||||    
T  19468464 aaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtggttgcatgagttcaaatcaagcagctgcaaattgggaaaaatgg 19468365  T
Q  201 aagcagaccttatgatatttt 221  Q
    ||||| || ||||||| ||||    
T  19468364 aagcaaacattatgatgtttt 19468344  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 29691374 - 29691338
Alignment:
Q  169 caaattaagcacctccaaattggggaaaatggaagca 205  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  29691374 caaatcaagcacctccaagttggggaaaatggaagca 29691338  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 29718886 - 29718850
Alignment:
Q  169 caaattaagcacctccaaattggggaaaatggaagca 205  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  29718886 caaatcaagcacctccaagttggggaaaatggaagca 29718850  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 10614652 - 10614831
Alignment:
Q  26 aagtccaagacctccagcttaggaactacaaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctcc 125  Q
    |||| ||| |||||||| || ||||| |||| ||| ||||||||| |||||| | ||  ||| | |  ||| ||||||| ||| |||||||||||| |||    
T  10614652 aagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatcc 10614751  T
Q  126 ttaaaacttgacaaatacctttagatatgcgcttacaacggtccaaattaagcacctccaaattggggaaaatggaagca 205  Q
    ||||||||||||||||||||| | ||| | | || ||||| | ||||| |||||  | ||||||||||||| ||||||||    
T  10614752 ttaaaacttgacaaataccttcatataagagattgcaacgattcaaatcaagcagttgcaaattggggaaattggaagca 10614831  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 7977724 - 7977757
Alignment:
Q  113 ttacaacatctccttaaaacttgacaaatacctt 146  Q
    ||||||||||||||||||||||||| ||||||||    
T  7977724 ttacaacatctccttaaaacttgaccaatacctt 7977757  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 1037618 - 1037584
Alignment:
Q  112 cttacaacatctccttaaaacttgacaaatacctt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  1037618 cttacaacatctccttaaaacttcacaaatacctt 1037584  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 17636365 - 17636316
Alignment:
Q  98 ttcaaatccctcatcttacaacatctccttaaaacttgacaaataccttt 147  Q
    ||||||| ||| || ||| |||||| ||||||||||||||||||||||||    
T  17636365 ttcaaatgcctaatattagaacatccccttaaaacttgacaaataccttt 17636316  T

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Target: scaffold0807 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 1420 - 1388
Alignment:
Q  110 atcttacaacatctccttaaaacttgacaaata 142  Q
    |||||| ||||||||||||||||||||||||||    
T  1420 atcttataacatctccttaaaacttgacaaata 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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