View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_high_6 (Length: 706)
Name: NF18339_high_6
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 583; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 69 - 695
Target Start/End: Complemental strand, 28930192 - 28929566
Alignment:
| Q |
69 |
cgtgtcatcggcttatatgctgctatgcaatttcaatgaaaatgagctggacagggatttggtttaaaacctggaaattgaacacatcagagtgagttag |
168 |
Q |
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| T |
28930192 |
cgtgtcatcggcttatatgctgctatgcaatttcaatgaaaatgagctggacagggatttggtttaaaacctggaaattgaacacatcagagtgagttag |
28930093 |
T |
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| Q |
169 |
aagtttccactggaatctggatggctaagcatgatcgcattctcactaatttataagaagagtaagatgatgattagtgaaccttggtgcaattattgtc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28930092 |
aagtttccactggaatctggatggctaagcatgatcgtattctcactaatttataagaagagtaagatgatgattagtgaaccttggtgcaattattatc |
28929993 |
T |
|
| Q |
269 |
aaaatgaaattgaagagactcttcatgtcctccgagattgtccttcggcaaatgcactgtggagtaagttgcttaatcctacgagaagtggtaatttctt |
368 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
28929992 |
aaaatgaaattgaagacgctcttcatgtcctccgagattgtccttcggcaaatgcactgtggtgtaagttgcttaatcctacaagaagtggtaatttctt |
28929893 |
T |
|
| Q |
369 |
ttattaaaattttaatgattgaattaatttggaacctctgtcatgagcatggcaaaataaatgatgtttcttggccaagcatttgtgggctgttacctgt |
468 |
Q |
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| T |
28929892 |
ttattaaaattttcatgattgaattaatttggaacctctgtcatgagcatggtaaaataaatgatgtttcgtggccaagcatttgtgggctgttacctgt |
28929793 |
T |
|
| Q |
469 |
cattctcactggaagtggcgaaatcacgaggtctaaaactctactttcttcgtccccaacaaccgtggcgtgaggttctggtgtgggctcattattatga |
568 |
Q |
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| T |
28929792 |
cattctcactggaagtggcgaaatcacgaggtctaaaactctactttcttcgtccccaacaaccgtggtgtgaggttctggtgtgggctcattattatga |
28929693 |
T |
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| Q |
569 |
gcaggcgcgaaccagcaatgtagtcatgagtcgtcatgagttgtcattattatggggggttgattcaaaggatccgacggttatagttttggattggaag |
668 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28929692 |
gcaggcgcgaaccagcaatgttgtcatgagtcgtcatgagttgtcattattatggggggttgattcaaaggatccgacggttatagttttggattggaag |
28929593 |
T |
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| Q |
669 |
attaaggtttgtcactcacttgttctt |
695 |
Q |
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| T |
28929592 |
attaaggtttgtcactcacttgttctt |
28929566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 28930262 - 28930210
Alignment:
| Q |
17 |
atgttgtgccccatctctgtcatggtttggtcaagaggatctggaatagaccc |
69 |
Q |
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||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
28930262 |
atgttttgccccacctctgtcatggttcggtcaagaggatctggaatagaccc |
28930210 |
T |
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