View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_1 (Length: 977)
Name: NF18339_low_1
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 923; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 923; E-Value: 0
Query Start/End: Original strand, 19 - 965
Target Start/End: Complemental strand, 39279329 - 39278383
Alignment:
| Q |
19 |
tttagaaacctttgacttatgatcatttatcacattttccatatctcttattgtggaatataacatactttgtttctccttattagcctcaacagatgat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39279329 |
tttagaaacctttgacttatgatcatttatcacattttccatatctcttattgtggaatataacatactttgtttctccttattagcctcaacagatgat |
39279230 |
T |
|
| Q |
119 |
tctgaattctgcaattgtagataaatttcttttagctgcctctcaagcaaatgcaatttcataatgcctccaccacctttcaaaagattcaactcttcat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39279229 |
tctgaattctgcaattgtagataaatttcttttagctgcctctcaagcaaatgcaatttcataatgcctccatcacctttcaaaagattcaactcttcat |
39279130 |
T |
|
| Q |
219 |
tgagttttgaattagtctctgtcaataacttacatttagcttctgcaatatcagccctactctcggcatcaagtacagtttcttttagttcagcaatatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39279129 |
tgagttttgaattagtctctgtcaataacttacatttagcttctgcaatatcagccctactctcggcatcaagtacagtttcttttagttcagcaatatg |
39279030 |
T |
|
| Q |
319 |
agttttcgtattacttacttcagcacatgaggcatcatacatattttgatattcattcgaagaggatttcacattccgtagatgaatttcagaatctttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39279029 |
agttttcgtattacttacttcagcacatgaggcatcatacatattttgatattcattcgaagaggacttcacattccgtagatgaatttcagaatctttt |
39278930 |
T |
|
| Q |
419 |
agctgcttctcaagtaaagacaccttacctcttagagcgaagatctcaggatcagaagggatttttgtatcttcggcgtcttttgaactagcttctgaac |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
39278929 |
agctgcttctcaagtaaagacaccttacctcttagagcgaagacctcaggatcagaagggatttgtgtatcttcagcgtcttttgaactagcttctgaac |
39278830 |
T |
|
| Q |
519 |
catttgtctgacctataagagagacatttaattcaccggtgctgctttcaatcttgttcaaaataatatccctggtatttaattgttctacaaaagtttc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39278829 |
catttgtctgacctataagagagacatttaattcaccggtgctgctttcaatcttgttcaaaataatatccctggtatttaattgttctacaaaagtttc |
39278730 |
T |
|
| Q |
619 |
gagcttagcttgaagctcggattcacgccgacttaaaccattcaaattgaaatgagaaatctggagtctactcaacagactttttgaaattcccatcaga |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39278729 |
gagcttagcttgaagctcggattcacgccgacttaaaccattcaaattgaaatgagaaatctggagtctactcaacagactttttgaaattcccatcaga |
39278630 |
T |
|
| Q |
719 |
atctcatgtgcattgtcagcctcaaacaatctttcccaaacatcaatagtttcttcctccgcttgaactagctcgtgctctaaggaggacatactttgtt |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39278629 |
atctcatgtgcattgtcagcctcaaacaatctttcccaaacatcaatagtttcttcctccgcttgaactagctcgtgctctaaggaggacatactttgtt |
39278530 |
T |
|
| Q |
819 |
tcagcttttcctgaatttctctagaatgatataaattattctcaagatccctttcttttgccaaagatttctctagcattgtcaaaatatttcgttgttg |
918 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39278529 |
tcagcttttcctgaatttctctagaatgatataaattcttctcaagatccctttcttttgccaaagatttctctagcattgtcaaaatatttcgttgttg |
39278430 |
T |
|
| Q |
919 |
ctcaattgtctgcagcttcatctctgcagcattaactttcacaggtt |
965 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39278429 |
ctcaattgtctgcagcttcatctctgcagcattaactttcacaggtt |
39278383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 365 - 589
Target Start/End: Original strand, 31466367 - 31466590
Alignment:
| Q |
365 |
tgatattcattcgaagaggatttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctcttagagcgaagatct |
464 |
Q |
| |
|
||||||||| | |||| ||| || |||||| ||| ||||||| |||||| | | |||||||||||||||| |||||||| |||||||| ||||| || |
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| T |
31466367 |
tgatattcaatagaagtggactttacattcaatagctgaattttagaatccatcaactgcttctcaagtaaatacaccttatctcttagaatgaagacct |
31466466 |
T |
|
| Q |
465 |
caggatcagaagggatttttgtatcttcggcgtcttttgaactagcttctgaaccatttgtctgacctataagagagacatttaattcaccggtgctgct |
564 |
Q |
| |
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||| ||| |||| ||| | ||||||| |||||||||||| ||||||||| ||||| ||| ||||||| ||||| | |||||||||||||||||||| |
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| T |
31466467 |
cagaatcggaagccattcgtttatcttcagcgtcttttgaattagcttctgcaccatgtgtttgacctagaagag-ggtgtttaattcaccggtgctgct |
31466565 |
T |
|
| Q |
565 |
ttcaatcttgttcaaaataatatcc |
589 |
Q |
| |
|
|||| || |||||| |||||||||| |
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| T |
31466566 |
ttcagtcgtgttcataataatatcc |
31466590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 361 - 452
Target Start/End: Original strand, 31466111 - 31466202
Alignment:
| Q |
361 |
attttgatattcattcgaagaggatttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctctta |
452 |
Q |
| |
|
||||||||||| || |||||| || ||||||||||||| |||| ||||||||||||| |||| ||||| ||||||||||||||| |||||| |
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| T |
31466111 |
attttgatatttatacgaagatgacttcacattccgtatgtgaaattcagaatcttttcgctggttctcgagtaaagacaccttatctctta |
31466202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 701 - 794
Target Start/End: Complemental strand, 5662314 - 5662221
Alignment:
| Q |
701 |
tttgaaattcccatcagaatctcatgtgcattgtcagcctcaaacaatctttcccaaacatcaatagtttcttcctccgcttgaactagctcgt |
794 |
Q |
| |
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|||||||||||| |||| |||||| | |||||||| |||||||| |||||||||||||| || || | ||||||||| | ||||| || ||||| |
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| T |
5662314 |
tttgaaattcccttcaggatctcacgcgcattgtctgcctcaaaaaatctttcccaaacttcgatcgcttcttcctctgtttgaattaactcgt |
5662221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 5662912 - 5662867
Alignment:
| Q |
19 |
tttagaaacctttgacttatgatcatttatcacattttccatatct |
64 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
5662912 |
tttagaaacctttgacttaagatcctttatcacatgttccatatct |
5662867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 932
Target Start/End: Complemental strand, 5662164 - 5662083
Alignment:
| Q |
851 |
aaattattctcaagatccctttcttttgccaaagatttctctagcattgtcaaaatatttcgttgttgctcaattgtctgca |
932 |
Q |
| |
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||||| ||||| ||||| |||| ||||||||||||||||| ||||| ||||||| |||| ||||||||| |||| |||| |
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| T |
5662164 |
aaattcttctcgagatctatttcatttgccaaagatttctcaagcatcctcaaaatgtttctatgttgctcagttgtttgca |
5662083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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