View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_12 (Length: 584)
Name: NF18339_low_12
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 8e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 234 - 397
Target Start/End: Original strand, 34138605 - 34138767
Alignment:
| Q |
234 |
attacactataacagaccagaaccaacgaacaaagaatgtgaaaaaatagcactctagaaaactttgactgctaataaatgctaaataattaaatatatt |
333 |
Q |
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| T |
34138605 |
attacactataacagaccagaaccaacgaacaaagaatgtgaaaaaatatcactctagaaaactttgactgctaataaatgctaaataa-taaatatatt |
34138703 |
T |
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| Q |
334 |
gtttccttatatttttattcgtgaattaattaatagaaaagcaagtactagtgctagttggtaa |
397 |
Q |
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| T |
34138704 |
gcttccttatatttttattcgtgaattaattaatagaaaagcaagtactagtgctagttggtaa |
34138767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 34138390 - 34138537
Alignment:
| Q |
18 |
atagtcatgttaaaatcgaatgtttgatttccacacaaacaaactaacattacatgtgctaacaaagaataggagtgaccaatgcaataaacgatnnnnn |
117 |
Q |
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| T |
34138390 |
atagtcatgttaaaatcgaatgtttgatttccacacaaacaaactaacattacatgtgctaac-aagaataggagtgaccaatgcaataaacgataaaaa |
34138488 |
T |
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| Q |
118 |
nnntattttcatatagccaaataagcatggttatcatcatccaggatcg |
166 |
Q |
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| T |
34138489 |
aaatattttcatatagccaaataagcatggttatcatcatccaggatcg |
34138537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 416 - 567
Target Start/End: Original strand, 34138792 - 34138940
Alignment:
| Q |
416 |
aacagaacaaaaccatataaataactaaataagtagtgaggtaggcaaggcatattcaccaacctttttcattttcaaaccttccaattccactcccttc |
515 |
Q |
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| T |
34138792 |
aacagaacaaaaccatataaataagtagtgaggtagtca---aggcaaggcatattcaccaacctttttcattttcaaaccttccaattccactctcttc |
34138888 |
T |
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| Q |
516 |
tttcttctcagtatattcacttactcccactatttccatttttctctattct |
567 |
Q |
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| T |
34138889 |
tttcttcttagtatattcacttactcccactatttccatttctctctattct |
34138940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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