View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_low_14 (Length: 530)

Name: NF18339_low_14
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_low_14
NF18339_low_14
[»] chr1 (4 HSPs)
chr1 (226-514)||(37492732-37493028)
chr1 (16-144)||(37492422-37492550)
chr1 (418-506)||(38037557-38037645)
chr1 (443-510)||(41958471-41958537)
[»] chr3 (3 HSPs)
chr3 (421-513)||(6821121-6821213)
chr3 (434-514)||(7129271-7129350)
chr3 (470-503)||(2902709-2902742)
[»] chr5 (5 HSPs)
chr5 (434-506)||(26133634-26133706)
chr5 (420-499)||(36268325-36268404)
chr5 (431-504)||(25454222-25454295)
chr5 (415-501)||(26689141-26689228)
chr5 (415-501)||(26958872-26958959)
[»] chr4 (4 HSPs)
chr4 (430-505)||(1073326-1073401)
chr4 (418-501)||(21050166-21050249)
chr4 (431-503)||(12567665-12567737)
chr4 (421-457)||(21782078-21782114)
[»] chr2 (1 HSPs)
chr2 (434-499)||(9733253-9733318)
[»] chr6 (1 HSPs)
chr6 (445-513)||(12343331-12343399)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 226 - 514
Target Start/End: Original strand, 37492732 - 37493028
Alignment:
Q  226 gggacaaccaaaattcattttatataggaattaaactccatattattgtcggacnnnnnnnngatagcacaacataaacaaaaactataacaatatacat 325  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  37492732 gggacaaccaaaattcattttatattggaaataaactccatattattgtcggacaaaaaaaagatagcacaacataaacaaaaactataacaatatacat 37492831  T
Q  326 gtannnnnnn-aaagccaaaaggaatcgatatattaaaaaaccaaatcaagtct------cacgaagtgtattgaaaaaagctttgataaagaaggaagt 418  Q
    |||        ||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  37492832 gtatttttgttaaagccaaaaggaattgatatattaaaaaaccaaatcaagtcatctaagcacgaagtgtattgaaaaaagctttgataaagaaggaagt 37492931  T
Q  419 gcagttaaactgaaaataggatttagcctccataattgatagtcaaag-tcaaataaaacatattttgacttaaaccaccaatatgactaaagtttt 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||||    
T  37492932 gcagttaaactgaaaataggatttagcctccataattgatagtcaaagatcgaataaaacatatttcgacttaaaccaccaatatgactgaagtttt 37493028  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 37492422 - 37492550
Alignment:
Q  16 atgaataatagatgaatcacataatgaaattgtacagattcatttccaataatctttattgaaaaacaaagtattgaattagttgatcatcaatattaga 115  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37492422 atgaataatagatgaatcacattatgaaattgtacatattcatttccaataatctctattgaaaaacaaagtattgaattagttgatcatcaatattaga 37492521  T
Q  116 tgaatgtaaatatacaatggtcctcatag 144  Q
    ||||||||||||||||||||| |||||||    
T  37492522 tgaatgtaaatatacaatggtactcatag 37492550  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 506
Target Start/End: Complemental strand, 38037645 - 38037557
Alignment:
Q  418 tgcagttaaactgaaaataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaatatgact 506  Q
    ||||||||||| | |||||||||||| |||||||||||| || ||||| || || ||||||||||| ||||||||||| ||||||||||    
T  38037645 tgcagttaaacggtaaataggatttaacctccataattggtaatcaaaatcgaacaaaacatatttcgacttaaaccatcaatatgact 38037557  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 443 - 510
Target Start/End: Complemental strand, 41958537 - 41958471
Alignment:
Q  443 agcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaatatgactaaag 510  Q
    ||||||||||||||||||| |||||  |||||||||| |||| |||||||||||||||||||||||||    
T  41958537 agcctccataattgatagtgaaagtggaataaaacatttttt-acttaaaccaccaatatgactaaag 41958471  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 421 - 513
Target Start/End: Complemental strand, 6821213 - 6821121
Alignment:
Q  421 agttaaactgaaaataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaatatgactaaagttt 513  Q
    |||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||||||  |||| ||||||||||| |||| ||||||    
T  6821213 agttaaacagaaaataggatttagcctccatgattgacagtcaaagtcgaataaaacatatttcaacttgaaccaccaatacgactgaagttt 6821121  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 434 - 514
Target Start/End: Original strand, 7129271 - 7129350
Alignment:
Q  434 ataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaatatgactaaagtttt 514  Q
    |||||||| |||||||| ||||| || |||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||    
T  7129271 ataggattaagcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaatacgac-aaagtttt 7129350  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 503
Target Start/End: Original strand, 2902709 - 2902742
Alignment:
Q  470 aataaaacatattttgacttaaaccaccaatatg 503  Q
    ||||||||||||||||| ||||||||||||||||    
T  2902709 aataaaacatattttgatttaaaccaccaatatg 2902742  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 434 - 506
Target Start/End: Complemental strand, 26133706 - 26133634
Alignment:
Q  434 ataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaatatgact 506  Q
    ||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  26133706 ataggatttagcctccacagttgatagtcaaagtcgaataaaacatatttcgacttaaaccaccaatacgact 26133634  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 499
Target Start/End: Original strand, 36268325 - 36268404
Alignment:
Q  420 cagttaaactgaaaataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaa 499  Q
    ||||||||| | || || |||| ||||| |||| ||| || |||||||| ||||||||||||||||||||||||||||||    
T  36268325 cagttaaacagtaattatgattaagccttcatagttggtaatcaaagtcgaataaaacatattttgacttaaaccaccaa 36268404  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 504
Target Start/End: Complemental strand, 25454295 - 25454222
Alignment:
Q  431 aaaataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaatatga 504  Q
    ||||||||||||| |||||||||||| || ||||||||||| |  || ||||| || |||||||| ||||||||    
T  25454295 aaaataggatttaacctccataattggtaatcaaagtcaaacatgacttatttcgatttaaaccatcaatatga 25454222  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 501
Target Start/End: Original strand, 26689141 - 26689228
Alignment:
Q  415 aagtgcagttaaactgaaaataggatttagcctccataattgatagtcaaagtcaaataaaacatatttt-gacttaaaccaccaata 501  Q
    ||||||| |||||| | ||||| | ||  |||||| || ||| || ||||| |||||||||||||||||| |||||||||||||||||    
T  26689141 aagtgcacttaaacagtaaataaggttatgcctccgtagttggtactcaaaatcaaataaaacatattttcgacttaaaccaccaata 26689228  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 501
Target Start/End: Original strand, 26958872 - 26958959
Alignment:
Q  415 aagtgcagttaaactgaaaataggatttagcctccataattgatagtcaaagtcaaataaaacatatttt-gacttaaaccaccaata 501  Q
    ||||||| |||||| | ||||| | ||  |||||| || ||| || ||||| |||||||||||||||||| |||||||||||||||||    
T  26958872 aagtgcacttaaacagtaaataaggttatgcctccgtagttggtactcaaaatcaaataaaacatattttcgacttaaaccaccaata 26958959  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 430 - 505
Target Start/End: Complemental strand, 1073401 - 1073326
Alignment:
Q  430 gaaaataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaatatgac 505  Q
    |||||| |||||||||||||||||||| |||||||| |  ||||||||||| ||||||| ||||||||||||||||    
T  1073401 gaaaatgggatttagcctccataattggtagtcaaaattgaataaaacatactttgactcaaaccaccaatatgac 1073326  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 418 - 501
Target Start/End: Original strand, 21050166 - 21050249
Alignment:
Q  418 tgcagttaaactgaaaataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaata 501  Q
    |||| |||||| | ||||||||||| |||||||||||||||| ||||| || | |||||||||||| |||||||||||||||||    
T  21050166 tgcacttaaacagtaaataggattttgcctccataattgatattcaaaatcgagtaaaacatatttcgacttaaaccaccaata 21050249  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 12567665 - 12567737
Alignment:
Q  431 aaaataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaatatg 503  Q
    |||||||||| ||||||  ||||||| || ||||| || || ||||||||||| || ||||||||||||||||    
T  12567665 aaaataggatctagcctttataattggtaatcaaaatcgaaaaaaacatatttcgatttaaaccaccaatatg 12567737  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 21782078 - 21782114
Alignment:
Q  421 agttaaactgaaaataggatttagcctccataattga 457  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  21782078 agttaaacagaaaataagatttagcctccataattga 21782114  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 499
Target Start/End: Complemental strand, 9733318 - 9733253
Alignment:
Q  434 ataggatttagcctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaa 499  Q
    ||||||||| ||||| | || | ||||||||| |||||||||| | ||||||| ||||||||||||    
T  9733318 ataggattttgcctctaaaaattatagtcaaaatcaaataaaataaattttgatttaaaccaccaa 9733253  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 513
Target Start/End: Original strand, 12343331 - 12343399
Alignment:
Q  445 cctccataattgatagtcaaagtcaaataaaacatattttgacttaaaccaccaatatgactaaagttt 513  Q
    |||||||||||| || |||||||| || ||||| ||||| |  ||||| ||||||||| ||||||||||    
T  12343331 cctccataattggtaatcaaagtcgaacaaaacttatttcgctttaaatcaccaatataactaaagttt 12343399  T

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