View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_16 (Length: 503)
Name: NF18339_low_16
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_16 |
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| [»] scaffold0240 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 13858736 - 13858295
Alignment:
| Q |
19 |
aatatgtataacaattctagcttggtctaggtctagtctattttgtgtctcaattaatatagcctctatgatgtgttgttgtgtgtggagtgcagagaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
13858736 |
aatatgtataacaattctagcttggtctaggtctagtctattttgtgtctcaattagtatagcctctatgatgtgttgt---gtgtggagtgcagagaat |
13858640 |
T |
|
| Q |
119 |
tattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatatggttg |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
13858639 |
tattatgcagtagtttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatctggttg |
13858540 |
T |
|
| Q |
219 |
taaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
13858539 |
taaggtaagtgaattttgtagcttcatgcttttctgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatag-aat |
13858441 |
T |
|
| Q |
319 |
taaatagtagctggctttatgcgacaacaactttttgagtttctagctttatttgttcgaccttagatgatttataattcctgcaaaattaactctgagc |
418 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13858440 |
tacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaaccttagatgatttataattcctgcaaaattaactctgagc |
13858341 |
T |
|
| Q |
419 |
tgattgtataacttgtaagtattatgtataacaatctgaaacttgt |
464 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
13858340 |
tgattgtataacttgtatgtattatgtataacaatctgaaacttgt |
13858295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 82 - 495
Target Start/End: Original strand, 40141767 - 40142179
Alignment:
| Q |
82 |
ctctatgatgtgttgttgtgtgtggagtgcagagaattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtag |
181 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40141767 |
ctctatgatgtgttgttgtgtgtggag--cagagaattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtag |
40141864 |
T |
|
| Q |
182 |
taaattgatacctagttactgatatgtgatatggttgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataa |
281 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40141865 |
taaattgatacctatttactgatatgtgatctggttgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataa |
40141964 |
T |
|
| Q |
282 |
tccgtagatatgaattttctgagtatcatatagaaattaaatagtagctggctttatgcgacaacaactttttgagtttctagctttatttgttcgacct |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
40141965 |
tccgtagatatgaattttctgagtatcatatagaaattacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaacct |
40142064 |
T |
|
| Q |
382 |
tagatgatttataattcctgcaaaattaactctgagctgattgtataacttgtaagtattatgtataacaatctgaaacttgtagttttcgtaaatgag- |
480 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40142065 |
tagatgatttataattcctgcaaatttaactctgagctgattgtataacttgtatgtattatgtataacaatctgaaacttgtagttttggtaaatgagt |
40142164 |
T |
|
| Q |
481 |
taatcagcctatgct |
495 |
Q |
| |
|
||||||||||||||| |
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|
| T |
40142165 |
taatcagcctatgct |
40142179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 35258690 - 35258642
Alignment:
| Q |
128 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctctt |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35258690 |
gtagcttggttttgatatgatttcatgtgataagccatacttacctctt |
35258642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 128 - 495
Target Start/End: Original strand, 32028914 - 32029275
Alignment:
| Q |
128 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatatggttgtaaggtaag |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
32028914 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatctggttgtaaggtaag |
32029013 |
T |
|
| Q |
228 |
tgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaaattaaatagta |
327 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
32029014 |
tgaattttgtagcttcat------ctgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatata-aaattacatagta |
32029106 |
T |
|
| Q |
328 |
gctggctttatgcgacaacaactttttgagtttctagctttatttgttcgaccttagatgatttataattcctgcaaaattaactctgagctgattgtat |
427 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32029107 |
gctggctttatgtgacaacaactttttgagtttctagctttatttgttcaagcttagatgatttataattcctgcaaaattaactctgagctgattgtat |
32029206 |
T |
|
| Q |
428 |
aacttgtaagtattatgtataacaatctgaaacttgtagttttcgtaaatgag-taatcagcctatgct |
495 |
Q |
| |
|
|| | || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
32029207 |
aatgtatatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttaatcagcctatgct |
32029275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 32028463 - 32028571
Alignment:
| Q |
19 |
aatatgtataacaattctagcttggtctaggtctagtctattttgtgtctcaattaatatagcctctatgatgtgttgttgtgtgtggagtgcagagaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32028463 |
aatatgtataacaattctagcttggtctaggtctagtctattttgtgtctcaattagtatagcctctatgatgtgttgttgtgtgtggagtgcagagagt |
32028562 |
T |
|
| Q |
119 |
tattatgca |
127 |
Q |
| |
|
||||||||| |
|
|
| T |
32028563 |
tattatgca |
32028571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 217 - 495
Target Start/End: Complemental strand, 9540514 - 9540236
Alignment:
| Q |
217 |
tgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaa |
316 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
9540514 |
tgtaaggtaagtgaagcttgtagcttcatgcttttctgcagaaggtagttgatctcaagggataatccgtagatatgaattttctgagtatcatata-aa |
9540416 |
T |
|
| Q |
317 |
attaaatagtagctggctttatgcgacaacaactttttgagtttctagctttatttgttcgaccttagatgatttataattcctgcaaaattaactctga |
416 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9540415 |
attacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaagcttagatgatttataattcctgcaaaattaactttga |
9540316 |
T |
|
| Q |
417 |
gctgattgtataacttgtaagtattatgtataacaatctgaaacttgtagttttcgtaaatgag-taatcagcctatgct |
495 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
9540315 |
gctgattgtataacttatatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttcatcagcctatgct |
9540236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 26053240 - 26053296
Alignment:
| Q |
128 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaa |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
26053240 |
gtagcttggttttgatatgatttcatgtgataagccatacttacctcttggcagtaa |
26053296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 29089072 - 29089121
Alignment:
| Q |
19 |
aatatgtataacaattctagcttggtctaggtctagtctattttgtgtct |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29089072 |
aatatgtataacaattctagcttggtctaggtctagtctattttgtgtct |
29089121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 8635802 - 8635843
Alignment:
| Q |
128 |
gtagcttggttttgatatgatttcatgtgataagccatactt |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8635802 |
gtagcttggttttgatatgatttcatgtgataaaccatactt |
8635843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 32671211 - 32671173
Alignment:
| Q |
89 |
atgtgttgttgtgtgtggagtgcagagaattattatgca |
127 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
32671211 |
atgtgttgttgtgtgtggaatgcagagagttattatgca |
32671173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 10579 - 10546
Alignment:
| Q |
94 |
ttgttgtgtgtggagtgcagagaattattatgca |
127 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
10579 |
ttgttgtgtgtggagtgcagagagttattatgca |
10546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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