View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_low_17 (Length: 499)

Name: NF18339_low_17
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_low_17
NF18339_low_17
[»] chr4 (12 HSPs)
chr4 (212-485)||(3746195-3746467)
chr4 (1-153)||(3745984-3746136)
chr4 (2-148)||(3751802-3751948)
chr4 (14-141)||(3781187-3781314)
chr4 (14-124)||(3767203-3767313)
chr4 (2-141)||(3762787-3762926)
chr4 (14-146)||(3776874-3777006)
chr4 (2-75)||(3755669-3755742)
chr4 (402-485)||(13538252-13538336)
chr4 (393-485)||(31351661-31351754)
chr4 (404-443)||(38415494-38415533)
chr4 (404-461)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (394-478)||(1028751-1028836)
chr8 (406-461)||(28300139-28300194)
chr8 (394-438)||(19756417-19756461)
[»] chr1 (1 HSPs)
chr1 (394-481)||(2098777-2098864)
[»] chr7 (6 HSPs)
chr7 (403-484)||(37307687-37307769)
chr7 (402-485)||(9667228-9667312)
chr7 (402-438)||(27227261-27227297)
chr7 (398-460)||(23982068-23982130)
chr7 (403-460)||(24250144-24250201)
chr7 (402-438)||(47684484-47684520)
[»] chr3 (3 HSPs)
chr3 (403-485)||(9737574-9737657)
chr3 (393-438)||(52910376-52910421)
chr3 (402-438)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (393-438)||(37123631-37123676)
chr2 (402-438)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 212 - 485
Target Start/End: Original strand, 3746195 - 3746467
Alignment:
Q  212 tgttgggtaggcatggtggtggggttaagagtgattttgatgctaactctagagaagccaaagtagtgaaggagagaagagaataatggaagatgaatga 311  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3746195 tgttgggtaggcatggtggtggggtta-gagtgattttgatgctaactctagagaaaccaaaatagtgaaggagagaagagaataatggaagatgaatga 3746293  T
Q  312 agtgtagctaagaggggtttgtttataagacaccaaatatagagggagaaaagtgaactaaaaaggacaaaagannnnnnnatcaggtaatctagtggct 411  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||       |||| |||| |||| ||||    
T  3746294 agtgtagccaagaggggtttgtttataagacaacaagtatagagggagaaaagtgaactaaaaaggacaaaagatttttttatcaagtaacctagcggct 3746393  T
Q  412 agattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatctctg 485  Q
    ||||| | ||||||||| | ||||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  3746394 agatttacacacattatatgtggagaaatgggaaatccggggttcgaacctcacccctacacataatatctctg 3746467  T

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Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 3745984 - 3746136
Alignment:
Q  1 tacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  3745984 tacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttcttggttgtttaggtgtaacaatttg 3746083  T
Q  101 gggtctattgaacgaacaaaatcataagtttcttctttttcaaatgatggtga 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746084 gggtctattgaacgaacaaaatcataagtttcttctttttcaaatgatggtga 3746136  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 3751802 - 3751948
Alignment:
Q  2 acaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttg 101  Q
    |||| |||||||| ||| || ||||| ||||||| ||| ||||||||| ||||||||||||||||||| |||||||| |||||||||  |||||||||      
T  3751802 acaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttaggcttaacaatttgc 3751901  T
Q  102 ggtctattgaacgaacaaaatcataagtttcttctttttcaaatgat 148  Q
    ||||||||| ||||||||||||| ||||||||| |||||| ||||||    
T  3751902 ggtctattggacgaacaaaatcaaaagtttcttgtttttctaatgat 3751948  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 3781187 - 3781314
Alignment:
Q  14 gaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaac 113  Q
    ||||| || ||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |||||||||  |||||||||  | ||||| | ||    
T  3781187 gaagttggattttttccactcaagacgtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggac 3781286  T
Q  114 gaacaaaatcataagtttcttctttttc 141  Q
    ||||||||||  |||| |||| ||||||    
T  3781287 gaacaaaatcgaaagtgtcttgtttttc 3781314  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 3767203 - 3767313
Alignment:
Q  14 gaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaac 113  Q
    ||||||||||||||||||||||  |||||||||||| | ||| ||||||||||||||||||| || |||||||||  |||||| ||  | ||||||| ||    
T  3767203 gaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggac 3767302  T
Q  114 gaacaaaatca 124  Q
    |||||||||||    
T  3767303 gaacaaaatca 3767313  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 3762787 - 3762926
Alignment:
Q  2 acaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttg 101  Q
    |||| ||||||||  |||||||| |||||||| |  |||||||||||  ||||||| ||||| ||||| ||||| || |||||||||  |||||| ||      
T  3762787 acaattgtaattgttgtagggttatttccacttagtatgtcatgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgc 3762886  T
Q  102 ggtctattgaacgaacaaaatcataagtttcttctttttc 141  Q
    ||||||||| ||||||||||||| |||||||||| |||||    
T  3762887 ggtctattggacgaacaaaatcaaaagtttcttcattttc 3762926  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 3776874 - 3777006
Alignment:
Q  14 gaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaac 113  Q
    ||||| || ||||||||||| |  |||||||||||| | ||| ||||||||||||||||||| || |||||||||  |||||| ||  | ||||||| ||    
T  3776874 gaagttggattttttccactaactatgtcatgccaatataatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggac 3776973  T
Q  114 gaacaaaatcataagtttcttctttttcaaatg 146  Q
    ||||||||||| | || ||||||||||| ||||    
T  3776974 gaacaaaatcaaaggtatcttctttttctaatg 3777006  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 3755669 - 3755742
Alignment:
Q  2 acaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttc 75  Q
    ||||||| || |||||||||||||||||||||||  ||||| |||||  ||||||||||||||||||| |||||    
T  3755669 acaactgcaactgaagtagggttttttccactcactatgtcgtgccagtagaatctgaaatgacttagtttttc 3755742  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 485
Target Start/End: Original strand, 13538252 - 13538336
Alignment:
Q  402 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 485  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  13538252 tctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 13538336  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 485
Target Start/End: Original strand, 31351661 - 31351754
Alignment:
Q  393 atcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctg 485  Q
    |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| | | ||||||||| | |||||| |||| | ||||||||    
T  31351661 atcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctg 31351754  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 443
Target Start/End: Original strand, 38415494 - 38415533
Alignment:
Q  404 tagtggctagattcaaacacattatgtatggagaaatgga 443  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatgga 38415533  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 461
Target Start/End: Original strand, 35010382 - 35010439
Alignment:
Q  404 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 461  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| | | |||||||||    
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaacc 35010439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 478
Target Start/End: Complemental strand, 1028836 - 1028751
Alignment:
Q  394 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataat 478  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| || | ||| | | |||||||||||| ||||| ||||||||    
T  1028836 tcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataat 1028751  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 28300194 - 28300139
Alignment:
Q  406 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 461  Q
    ||||||||||||| ||||||||||||||||||| |||  ||| | |||||||||||    
T  28300194 gtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaacc 28300139  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 19756417 - 19756461
Alignment:
Q  394 tcaggtaatctagtggctagattcaaacacattatgtatggagaa 438  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||    
T  19756417 tcaggtagcctagtggctagattcacacacattatgtgtggagaa 19756461  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 2098864 - 2098777
Alignment:
Q  394 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatc 481  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| | ||||||| |   | |||||||||||||||||    
T  2098864 tcagataatctagtggctagattcacacacattatatgtggagaagtggagaatccggggttcggattccgcccctacacataatatc 2098777  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 484
Target Start/End: Complemental strand, 37307769 - 37307687
Alignment:
Q  403 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctct 484  Q
    |||||||||||||||||||||||||| | ||||||| |||  ||| | | ||||||||| | ||||| |||||||||||||||    
T  37307769 ctagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctct 37307687  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 485
Target Start/End: Original strand, 9667228 - 9667312
Alignment:
Q  402 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 485  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  9667228 tctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 9667312  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 27227261 - 27227297
Alignment:
Q  402 tctagtggctagattcaaacacattatgtatggagaa 438  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27227261 tctagtggctagattcaaacacattatgtgtggagaa 27227297  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 460
Target Start/End: Complemental strand, 23982130 - 23982068
Alignment:
Q  398 gtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 460  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| ||| | | ||||||||    
T  23982130 gtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaac 23982068  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 460
Target Start/End: Original strand, 24250144 - 24250201
Alignment:
Q  403 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 460  Q
    |||||| ||||||||| ||||||||||| |||| || |||| ||| ||||||||||||    
T  24250144 ctagtgactagattcacacacattatgtgtggaaaagtggagaatccagggttcgaac 24250201  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 47684484 - 47684520
Alignment:
Q  402 tctagtggctagattcaaacacattatgtatggagaa 438  Q
    |||| |||||||||||| |||||||||||||||||||    
T  47684484 tctattggctagattcacacacattatgtatggagaa 47684520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 9737574 - 9737657
Alignment:
Q  403 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaa-cctcacccctacacataatatctctg 485  Q
    ||||||| || ||||| ||||||||||| | ||||||| |||||| |  |||||||| ||| |||||| |||||||||||||||    
T  9737574 ctagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctg 9737657  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 52910376 - 52910421
Alignment:
Q  393 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 438  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  52910376 atcaggtagtctagtgactagattcacacacattatgtgtggagaa 52910421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 11988928 - 11988964
Alignment:
Q  402 tctagtggctagattcaaacacattatgtatggagaa 438  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  11988928 tctagtggctagattcacacacattatgtgtggagaa 11988964  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 37123676 - 37123631
Alignment:
Q  393 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 438  Q
    |||| ||| ||||||||||||||||| ||||||||||| |||||||    
T  37123676 atcaagtagtctagtggctagattcacacacattatgtgtggagaa 37123631  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 8915675 - 8915639
Alignment:
Q  402 tctagtggctagattcaaacacattatgtatggagaa 438  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  8915675 tctagtggctagattcacacacattatttatggagaa 8915639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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