View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18339_low_2 (Length: 971)
Name: NF18339_low_2
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 805; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 12 - 955
Target Start/End: Complemental strand, 26516625 - 26515687
Alignment:
| Q |
12 |
agcaaagggaatacatgctagatgatgcatataataagtacgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaataccgtgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26516625 |
agcaaagggaatacatgctagatgatgcatataataagtatgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaacaccgtgt |
26516526 |
T |
|
| Q |
112 |
accagttaagcctatcacgaaagagcaagttgctgcaatgaaagcccaatttaaagaaattgatactcggcctgcaaagaaggtggctgaggccaaagca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26516525 |
accagttaagcctatcacgaaagagcaagttgctgcaatgaaagcccaatctaaagaaatt-atactcggcctgcaaagaaggtggctgaggccaaagca |
26516427 |
T |
|
| Q |
212 |
cgcaagaagcgtgttgctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccaatcgttcaaagagtaagc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26516426 |
cgcaagaagcgtgttgctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccgatcgttcaaagagtaagc |
26516327 |
T |
|
| Q |
312 |
aaattgatcgactatatnnnnnnngctgttccaaaaaggcctcagaaggagtatgtagttgcaaagaaaggtgtccaagttaagactggcaggggaaaag |
411 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26516326 |
aaattgatcgactatataaaaaat-ctgttccaaaaaggcctcagaaggagtatgtagttgcaaagaaaggtgtccaagttaagactggcaggggaaaag |
26516228 |
T |
|
| Q |
412 |
tccttgttgatcgcaggatgaagaaggatgtgaggaaaaatggaattggtaaggcaggcaaaagaggttccaatgcaaagggcaaggcaccaaagggtgg |
511 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26516227 |
tccttgttgatcgcaggatgaagaagaatatgaggaaaaatggaattggtaaggcaggcaaaagaggttccaatgcaaagggaaaggcaccaaagggtgg |
26516128 |
T |
|
| Q |
512 |
cagggctccgaatggcaagatccctatgggaaaaggatcttcaaaggcctctgccaagaagggaagaaaataactgaaaataggttggtgcgcaatttca |
611 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26516127 |
cagggctccgattggaaagatccctatgggaaaaggatcttcaaaggcctctgccaagaagggaagaaaataactgaaaataggttggtgcgcaatttca |
26516028 |
T |
|
| Q |
612 |
gtgatgagttgtcttactttccaagctaaactttgcgttcannnnnnnnnncttccttcttttggttgttactgactgtgctatagatgatatataaatt |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26516027 |
gtgatgagttgtcttactttccaagctaaactttgctttcatttttttct--tttcttcttttggttgttactgactgtgctatagatgatatataaatt |
26515930 |
T |
|
| Q |
712 |
aaatataactgaagttatttagaaattgattgcgggcgccaatataccgttgttggcggaaacagtttatcagaatcgttagaaatgattaatcatatga |
811 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26515929 |
aaatataactgaagttatttagaaattgattgcgggcgccaatataccgttcttggcggaaacagtttatcagaatcgttagaaatgattaatcatatga |
26515830 |
T |
|
| Q |
812 |
ttttatgggtaatttgggaggtgatcaatgattgcatgctctttaatcaggcttatactttagcataatttggaatttactaaggctatatcgtgaaatg |
911 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26515829 |
ttttatgggtaattt-ggaagtgatcaatgattgcatgctctttaatcaggcttatactttagcataatttggaatttactaaggcaatatcgtgaaatg |
26515731 |
T |
|
| Q |
912 |
catcgagttcaggtctaattggtgtaacttgtgagccttctata |
955 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26515730 |
catcgagttcaggtctaattggtgtaacttgtgagccttctata |
26515687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 513
Target Start/End: Complemental strand, 30373086 - 30372583
Alignment:
| Q |
12 |
agcaaagggaatacatgctagatgatgcatataataagtacgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaataccgtgt |
111 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
30373086 |
agcaaagggaacagatgctagatgatgcatataataaatacatgtttgatgaccagggattgcccaagtggtttctcgatgaggaaagaaaacaccgtgt |
30372987 |
T |
|
| Q |
112 |
accagttaagcctatcacgaaagagcaagttgctgcaatgaaagcccaatttaaagaaattgatactcggcctgcaaagaaggtggctgaggccaaagca |
211 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||||| ||||| || |||||||||| |||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
30372986 |
accagttaagcctgtcacaaaagaggaagttgctgctatgaaggcacaatttaaagcaattgatactagacctgcaaagaaggtggctgaggccaaagca |
30372887 |
T |
|
| Q |
212 |
cgcaagaagcgtgttgctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccaatcgttcaaagagtaagc |
311 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||| |
|
|
| T |
30372886 |
cgaaagaagcgtgttgcaatgaggaagattgagaaagtccgcaagaaggccaacgctatatcagatcagccagacatatctgatcgttccaagagtaagc |
30372787 |
T |
|
| Q |
312 |
aaattgatcgactatatnnnnnnngctgttccaaaaaggcctcagaaggagtatgtagttgcaaagaaaggtgtccaagttaagactggcaggggaaaag |
411 |
Q |
| |
|
||||||| ||||| ||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
30372786 |
aaattgaccgactctat-aaaaacgcagttccaaaaaggcctcaaaaggagtatgtaactgcaaagaaaggtgtccaagttaaggctggtaagggaaaag |
30372688 |
T |
|
| Q |
412 |
tccttgttgatcgcaggatgaagaaggatgtgaggaaaaatggaattggtaaggcaggcaaaagaggttccaatgcaaag---ggcaaggcaccaaaggg |
508 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| ||| || ||||||| |||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
30372687 |
tccttgttgatcgcaggatgaagagtgatgcgaggaaaagtggtatgggtaagggaggcaaaagaggttccaaggcaaagggcggcaaggcaccaaaggg |
30372588 |
T |
|
| Q |
509 |
tggca |
513 |
Q |
| |
|
|||| |
|
|
| T |
30372587 |
cggca |
30372583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 789 - 929
Target Start/End: Complemental strand, 30372230 - 30372090
Alignment:
| Q |
789 |
gttagaaatgattaatcatatgattttatgggtaatttgggaggtgatcaatgattgcatgctctttaatcaggcttatactttagcataatttggaatt |
888 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| | |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
30372230 |
gttagaaatggttaatgatatgattttatgggtaatattggaggtgaacaatgattgtatgctctataatcaggcttatacttcagcattattttgaatt |
30372131 |
T |
|
| Q |
889 |
tactaaggctatatcgtgaaatgcatcgagttcaggtctaa |
929 |
Q |
| |
|
|| ||||| ||||||||| ||||| | |||||||||||| |
|
|
| T |
30372130 |
tatcaaggccatatcgtgagatgcactgggttcaggtctaa |
30372090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 566 - 646
Target Start/End: Complemental strand, 30372497 - 30372417
Alignment:
| Q |
566 |
caagaagggaagaaaataactgaaaataggttggtgcgcaatttcagtgatgagttgtcttactttccaagctaaactttg |
646 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||| |||| |
|
|
| T |
30372497 |
caagaagggaaggaaataactgaaaataggttggtgcacaatttcagtgatgagttttcctactttccaagccaaattttg |
30372417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 492 - 530
Target Start/End: Complemental strand, 30372586 - 30372548
Alignment:
| Q |
492 |
ggcaaggcaccaaagggtggcagggctccgaatggcaag |
530 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
30372586 |
ggcaaggcaccaaagggtggcagggctccaagtggcaag |
30372548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University