View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_low_20 (Length: 464)

Name: NF18339_low_20
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_low_20
NF18339_low_20
[»] chr7 (7 HSPs)
chr7 (57-448)||(46701718-46702108)
chr7 (57-281)||(46129066-46129296)
chr7 (319-442)||(46122877-46122999)
chr7 (98-322)||(46123035-46123256)
chr7 (319-366)||(46129006-46129053)
chr7 (394-448)||(46128953-46129007)
chr7 (19-56)||(31109835-31109872)
[»] scaffold0355 (2 HSPs)
scaffold0355 (19-61)||(9893-9935)
scaffold0355 (19-55)||(134-170)
[»] chr6 (3 HSPs)
chr6 (19-56)||(28184297-28184334)
chr6 (19-58)||(14737829-14737868)
chr6 (19-56)||(14742688-14742725)
[»] chr3 (2 HSPs)
chr3 (19-56)||(22173447-22173484)
chr3 (19-57)||(18656227-18656265)
[»] chr1 (3 HSPs)
chr1 (19-58)||(41398030-41398069)
chr1 (19-56)||(41386543-41386580)
chr1 (19-59)||(44024126-44024166)
[»] chr5 (1 HSPs)
chr5 (19-57)||(15044483-15044521)
[»] chr4 (1 HSPs)
chr4 (19-57)||(5732457-5732495)
[»] scaffold0127 (1 HSPs)
scaffold0127 (19-56)||(34202-34239)
[»] chr2 (1 HSPs)
chr2 (19-56)||(39812241-39812278)


Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 57 - 448
Target Start/End: Complemental strand, 46702108 - 46701718
Alignment:
Q  57 atagttaccctaaattctaaaacatgaaagtattaattacaattttccaacaatacaacaaatttttggtatcttaacatatcatagaataattagttct 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46702108 atagttaccctaaattctaaaacatgaaagtattaattacaattttccaacaatacaacaaatttttggtatcttaacatatcatagaataattagttct 46702009  T
Q  157 tctagtctatccttctaacattaagtgtcaagtttggcatatttcgttagagtcatattattaaccattttcaattactaatggagtattaattaccctt 256  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  46702008 tctaatctatccttctaacattaagtgtcaagtttggcatatttcgttagagtcatattattaaccattttc-attactaatggagtattatttaccctt 46701910  T
Q  257 ctttttcactaatatctccatttattatatcacaatgcagcaaactactatatattaaaaagagtatagtgaatgattttgttaagaagtatgcataaac 356  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46701909 ttttttcactaatatctccatttattatatcacaatgcagcaaactactatatattaaaaagagtatagtgaaagattttgttaagaagtatgcataaac 46701810  T
Q  357 tacagagagagtacataaacataactaatgnnnnnnngattttaccttggccattataacatcatattcctgcacgttgaaatccaagtcac 448  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46701809 tacagagagagtacataaacataactaatgaaaaaaagattttaccttggccattataacatcatattcctgcacgttgaaatccaagtcac 46701718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 57 - 281
Target Start/End: Complemental strand, 46129296 - 46129066
Alignment:
Q  57 atagttaccctaaattctaaaacatgaaagtattaattacaatttt-------ccaacaatacaacaaatttttggtatcttaacatatcatagaataat 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||  ||| |||||||    
T  46129296 atagttaccctaaattctaaaacatgaaagtattaattacaattttgaattttccaacaatacaacaaatttttggtatcttaacat--catggaataat 46129199  T
Q  150 tagttcttctagtctatccttctaacatt-aagtgtcaagtttggcatatttcgttagagtcatattattaaccattttcaattactaatggagtattaa 248  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46129198 tagttcttctactctatccttctaacatttaagtgtcaagtttagcatatttcgttagagtcatattattaaccattttcaattactaatggagtattaa 46129099  T
Q  249 ttacccttctttttcactaatatctccatttat 281  Q
    || ||||||||||||||||||||||||||||||    
T  46129098 ttgcccttctttttcactaatatctccatttat 46129066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 319 - 442
Target Start/End: Complemental strand, 46122999 - 46122877
Alignment:
Q  319 agtatagtgaatgattttgttaagaagtatgcataaactacagagagagtacataaacataactaatgnnnnnnngattttaccttggccattataacat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||| | |||    
T  46122999 agtatagtgaatgattttgttaagaagtatgcataaactacagagagagtacttaaacataactaatgaaaaaac-attttaccttggccattacaccat 46122901  T
Q  419 catattcctgcacgttgaaatcca 442  Q
    |||||||||||||||| |||||||    
T  46122900 catattcctgcacgttcaaatcca 46122877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 322
Target Start/End: Complemental strand, 46123256 - 46123035
Alignment:
Q  98 attttccaacaatacaacaaatttttggtatcttaacatatcatagaataattagttcttctagtctatccttctaacattaagtgtcaagtttggcata 197  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||||| || ||||||||| || ||  ||| |||  |||| | | |||||||| | |||    
T  46123256 attttccaataataca-caagtttttggtatcttaacatatcatagactagttagttcttttactccctccatct--catttaatttcaagtttagaata 46123160  T
Q  198 tttcgttagagtcatattattaaccattttcaattactaatggagtattaattacccttctttttcactaatatctccatttattatatcacaatgcagc 297  Q
     |||||| | ||||||||||   ||||||| |||||||||||||| ||||||||| ||  |||||||| ||||| || |||||||| |||||||| || |    
T  46123159 attcgtttgtgtcatattatctgccattttaaattactaatggagcattaattactct--tttttcaccaatatgtcaatttattacatcacaattcacc 46123062  T
Q  298 aaactac--tatatattaaaaagagta 322  Q
     ||| ||  ||||||||||||||||||    
T  46123061 taacaactatatatattaaaaagagta 46123035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 366
Target Start/End: Complemental strand, 46129053 - 46129006
Alignment:
Q  319 agtatagtgaatgattttgttaagaagtatgcataaactacagagaga 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46129053 agtatagtgaatgattttgttaagaagtatgcataaactacagagaga 46129006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 46129007 - 46128953
Alignment:
Q  394 gattttaccttggccattataacatcatattcctgcacgttgaaatccaagtcac 448  Q
    ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||    
T  46129007 gattttaccttggccattatatctttatagtcctgcacgttgaaatccaagtcac 46128953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 31109835 - 31109872
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaaca 56  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  31109835 attggtgtgaaggtttctttggaaccggattcacaaca 31109872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 9893 - 9935
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaacaatagt 61  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  9893 attggtgtgaaggtttgtttgaaaccggattcacaacattagt 9935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 134 - 170
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaac 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  134 attggtgtgaaggtttgtttgaaaccggattcacaac 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 28184334 - 28184297
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaaca 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28184334 attggtgtgaaggtttgtttgaaaccggattcacaaca 28184297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 14737829 - 14737868
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaacaat 58  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  14737829 attggtgtgaaggtttatttgaaaccggattcacaacaat 14737868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 14742688 - 14742725
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaaca 56  Q
    |||||||||||||||| |||||||||||||||||||||    
T  14742688 attggtgtgaaggtttatttgaaaccggattcacaaca 14742725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 22173447 - 22173484
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaaca 56  Q
    |||||||||||| |||||||||||||||||||||||||    
T  22173447 attggtgtgaagatttgtttgaaaccggattcacaaca 22173484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 18656265 - 18656227
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaacaa 57  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  18656265 attggtgtgaaggtttctttggaaccggattcacaacaa 18656227  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 41398069 - 41398030
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaacaat 58  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  41398069 attggtgtgaaggtttctttggaaccggattcacaacaat 41398030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 41386580 - 41386543
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaaca 56  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  41386580 attggtgtgaaggtttctttggaaccggattcacaaca 41386543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 44024126 - 44024166
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaacaata 59  Q
    |||||||||||||||| |||| || ||||||||||||||||    
T  44024126 attggtgtgaaggtttatttggaatcggattcacaacaata 44024166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 15044521 - 15044483
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaacaa 57  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  15044521 attggtgtgaaggtttctttggaaccggattcacaacaa 15044483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 5732495 - 5732457
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaacaa 57  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  5732495 attggtgtgaaggtttctttggaaccggattcacaacaa 5732457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 34202 - 34239
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaaca 56  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  34202 attggtgtgaaggtttctttggaaccggattcacaaca 34239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 39812241 - 39812278
Alignment:
Q  19 attggtgtgaaggtttgtttgaaaccggattcacaaca 56  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  39812241 attggtgtgaaggtttctttggaaccggattcacaaca 39812278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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